Hiroshi Mamitsuka
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Explore the profile of Hiroshi Mamitsuka including associated specialties, affiliations and a list of published articles.
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112
Citations
1273
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Recent Articles
11.
You R, Yao S, Mamitsuka H, Zhu S
Bioinformatics
. 2021 Jul;
37(Suppl_1):i262-i271.
PMID: 34252926
Motivation: Automated function prediction (AFP) of proteins is a large-scale multi-label classification problem. Two limitations of most network-based methods for AFP are (i) a single model must be trained for...
12.
Liu L, Mamitsuka H, Zhu S
Bioinformatics
. 2021 Apr;
37(19):3328-3336.
PMID: 33822886
Motivation: Exploring the relationship between human proteins and abnormal phenotypes is of great importance in the prevention, diagnosis and treatment of diseases. The human phenotype ontology (HPO) is a standardized...
13.
Guvenc Paltun B, Kaski S, Mamitsuka H
IEEE/ACM Trans Comput Biol Bioinform
. 2021 Mar;
19(4):2197-2207.
PMID: 33705322
Detecting predictive biomarkers from multi-omics data is important for precision medicine, to improve diagnostics of complex diseases and for better treatments. This needs substantial experimental efforts that are made difficult...
14.
Cai M, Nguyen C, Mamitsuka H, Li L
Brief Bioinform
. 2021 Jan;
22(5).
PMID: 33515011
Motivation: Gene set enrichment analysis (GSEA) has been widely used to identify gene sets with statistically significant difference between cases and controls against a large gene set. GSEA needs both...
15.
Kaneko H, Blanc-Mathieu R, Endo H, Chaffron S, Delmont T, Gaia M, et al.
iScience
. 2021 Jan;
24(1):102002.
PMID: 33490910
The biological carbon pump, in which carbon fixed by photosynthesis is exported to the deep ocean through sinking, is a major process in Earth's carbon cycle. The proportion of primary...
16.
You R, Liu Y, Mamitsuka H, Zhu S
Bioinformatics
. 2020 Sep;
37(5):684-692.
PMID: 32976559
Motivation: With the rapid increase of biomedical articles, large-scale automatic Medical Subject Headings (MeSH) indexing has become increasingly important. FullMeSH, the only method for large-scale MeSH indexing with full text,...
17.
Liu L, Huang X, Mamitsuka H, Zhu S
Bioinformatics
. 2020 May;
36(14):4180-4188.
PMID: 32379868
Motivation: Annotating human proteins by abnormal phenotypes has become an important topic. Human Phenotype Ontology (HPO) is a standardized vocabulary of phenotypic abnormalities encountered in human diseases. As of November...
18.
Nguyen C, Mamitsuka H
IEEE Trans Pattern Anal Mach Intell
. 2020 Feb;
43(8):2710-2722.
PMID: 32086195
Hypergraph is a general way of representing high-order relations on a set of objects. It is a generalization of graph, in which only pairwise relations can be represented. It finds...
19.
Gao J, Liu L, Yao S, Huang X, Mamitsuka H, Zhu S
BMC Med Genomics
. 2019 Dec;
12(Suppl 10):187.
PMID: 31865916
Background: As a standardized vocabulary of phenotypic abnormalities associated with human diseases, the Human Phenotype Ontology (HPO) has been widely used by researchers to annotate phenotypes of genes/proteins. For saving...
20.
Nguyen D, Nguyen C, Mamitsuka H
Brief Bioinform
. 2019 Dec;
22(1):164-177.
PMID: 31838499
Motivation: Adverse drug reaction (ADR) or drug side effect studies play a crucial role in drug discovery. Recently, with the rapid increase of both clinical and non-clinical data, machine learning...