H M Berman
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Explore the profile of H M Berman including associated specialties, affiliations and a list of published articles.
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98
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15923
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Recent Articles
1.
Schneider B, Neidle S, Berman H
Biopolymers
. 2009 Apr;
42(1):113-24.
PMID: 19350745
The DNA backbone geometry was analyzed for 96 crystal structures of oligodeoxynucleotides. The ranges and mean values of the torsion angles for the observed subclasses of the A-, B-, and...
2.
Chen S, Gunasekera A, Zhang X, Kunkel T, Ebright R, Berman H
J Mol Biol
. 2001 Nov;
314(1):75-82.
PMID: 11724533
The catabolite activator protein (CAP) sharply bends DNA in the CAP-DNA complex, introducing a DNA kink, with a roll angle of approximately 40 degrees and a twist angle of approximately...
3.
Chen S, Vojtechovsky J, Parkinson G, Ebright R, Berman H
J Mol Biol
. 2001 Nov;
314(1):63-74.
PMID: 11724532
The catabolite activator protein (CAP) makes no direct contact with the consensus base-pair T:A at position 6 of the DNA half-site 5'-A(1)A(2)A(3)T(4)G(5)T(6)G(7)A(8)T(9)C(10)T(11)-3' but, nevertheless, exhibits strong specificity for T:A at...
4.
Olson W, Bansal M, Burley S, DICKERSON R, Gerstein M, Harvey S, et al.
J Mol Biol
. 2001 Oct;
313(1):229-37.
PMID: 11601858
No abstract available.
5.
The crystal and molecular structure of a collagen-like peptide with a biologically relevant sequence
Kramer R, Bella J, Brodsky B, Berman H
J Mol Biol
. 2001 Jul;
311(1):131-47.
PMID: 11469863
A detailed description of the 2.0 A structure of the triple-helical peptide, (Pro-Hyp-Gly)(3)-Ile-Thr-Gly-Ala-Arg-Gly-Leu-Ala-Gly-Pro-Hyp-Gly-(Pro-Hyp-Gly)(3), denoted as T3-785, is presented. This peptide contains a biologically relevant sequence and was designed to model...
6.
Das U, Chen S, Fuxreiter M, Vaguine A, RICHELLE J, Berman H, et al.
Acta Crystallogr D Biol Crystallogr
. 2001 May;
57(Pt 6):813-28.
PMID: 11375501
The program SFCHECK [Vaguine et al. (1999), Acta Cryst. D55, 191-205] is used to survey the quality of the structure-factor data and the agreement of those data with the atomic...
7.
Jones S, Daley D, Luscombe N, Berman H, Thornton J
Nucleic Acids Res
. 2001 Feb;
29(4):943-54.
PMID: 11160927
A detailed computational analysis of 32 protein-RNA complexes is presented. A number of physical and chemical properties of the intermolecular interfaces are calculated and compared with those observed in protein-double-stranded...
8.
Luscombe N, Austin S, Berman H, Thornton J
Genome Biol
. 2000 Dec;
1(1):REVIEWS001.
PMID: 11104519
On the basis of a structural analysis of 240 protein-DNA complexes contained in the Protein Data Bank (PDB), we have classified the DNA-binding proteins involved into eight different structural/functional groups,...
9.
Berman H, Bhat T, Bourne P, Feng Z, Gilliland G, Weissig H, et al.
Nat Struct Biol
. 2000 Dec;
7 Suppl:957-9.
PMID: 11103999
The PDB has created systems for the processing, exchange, query, and distribution of data that will enable many aspects of high throughput structural genomics.
10.
Kramer R, Venugopal M, Bella J, Mayville P, Brodsky B, Berman H
J Mol Biol
. 2000 Sep;
301(5):1191-205.
PMID: 10966815
The crystal structure of the triple-helical peptide, (Pro-Hyp-Gly)(4)-Glu-Lys-Gly-(Pro-Hyp-Gly)(5) has been determined to 1.75 A resolution. This peptide was designed to examine the effect of a pair of adjacent, oppositely charged...