H M Berman
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Explore the profile of H M Berman including associated specialties, affiliations and a list of published articles.
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Recent Articles
11.
Bella J, Berman H
Structure
. 2000 Jun;
8(6):R121-6.
PMID: 10873865
The recently determined crystal structure of the complex between an integrin I domain and a synthetic collagen peptide shows a collagen triple-helix engaged in specific macromolecular recognition and binding. This...
12.
Bhat T, Bourne P, Feng Z, Gilliland G, Jain S, Ravichandran V, et al.
Nucleic Acids Res
. 2000 Jan;
29(1):214-8.
PMID: 11125095
The Protein Data Bank (PDB; http://www.rcsb.org/pdb/) is the single worldwide archive of structural data of biological macromolecules. This paper describes the data uniformity project that is underway to address the...
13.
Berman H, Westbrook J, Feng Z, Gilliland G, Bhat T, Weissig H, et al.
Nucleic Acids Res
. 1999 Dec;
28(1):235-42.
PMID: 10592235
The Protein Data Bank (PDB; http://www.rcsb.org/pdb/ ) is the single worldwide archive of structural data of biological macromolecules. This paper describes the goals of the PDB, the systems in place...
14.
Kramer R, Bella J, Mayville P, Brodsky B, Berman H
Nat Struct Biol
. 1999 May;
6(5):454-7.
PMID: 10331873
The 2 A crystal structure reported here of the collagen-like model peptide, T3-785, provides the first visualization of how the sequence of collagen defines distinctive local conformational variations in triple-helical...
15.
Jones S, van Heyningen P, Berman H, Thornton J
J Mol Biol
. 1999 May;
287(5):877-96.
PMID: 10222198
A detailed analysis of the DNA-binding sites of 26 proteins is presented using data from the Nucleic Acid Database (NDB) and the Protein Data Bank (PDB). Chemical and physical properties...
16.
Berman H, Zardecki C, Westbrook J
Acta Crystallogr D Biol Crystallogr
. 1999 Mar;
54(Pt 6 Pt 1):1095-104.
PMID: 10089485
The Nucleic Acid Database (NDB) distributes information about nucleic acid-containing structures. Here the information content of the database as well as the query capabilities are described. A summary of how...
17.
Berman H
Curr Opin Biotechnol
. 1999 Feb;
10(1):76-80.
PMID: 10047508
For many years the primary source of information about biological macromolecules was the Protein Data Bank, which is a repository of files containing coordinates of biological macromolecules. Now a variety...
18.
Kramer R, Berman H
J Biomol Struct Dyn
. 1998 Dec;
16(2):367-80.
PMID: 9833675
No abstract available.
19.
Jain S, Shinde U, Li Y, Inouye M, Berman H
J Mol Biol
. 1998 Nov;
284(1):137-44.
PMID: 9811547
We report here the crystallographic structure determination of an autoprocessed (Ser221Cys)-subtilisin E-propeptide complex at 2.0 A resolution. The subtilisin domain sequence has a single substitution (Ser221Cys) which has been shown...
20.
Schneider B, Patel K, Berman H
Biophys J
. 1998 Oct;
75(5):2422-34.
PMID: 9788937
Water distributions around phosphate groups in 59 B-, A-, and Z-DNA crystal structures were analyzed. It is shown that the waters are concentrated in six hydration sites per phosphate and...