Gary J Olsen
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Explore the profile of Gary J Olsen including associated specialties, affiliations and a list of published articles.
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34
Citations
14457
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Recent Articles
1.
Olson R, Assaf R, Brettin T, Conrad N, Cucinell C, Davis J, et al.
Nucleic Acids Res
. 2022 Nov;
51(D1):D678-D689.
PMID: 36350631
The National Institute of Allergy and Infectious Diseases (NIAID) established the Bioinformatics Resource Center (BRC) program to assist researchers with analyzing the growing body of genome sequence and other omics-related...
2.
Davis J, Wattam A, Aziz R, Brettin T, Butler R, Butler R, et al.
Nucleic Acids Res
. 2019 Nov;
48(D1):D606-D612.
PMID: 31667520
The PathoSystems Resource Integration Center (PATRIC) is the bacterial Bioinformatics Resource Center funded by the National Institute of Allergy and Infectious Diseases (https://www.patricbrc.org). PATRIC supports bioinformatic analyses of all bacteria...
3.
Zhang C, Phillips A, Wipfler R, Olsen G, Whitaker R
Nat Commun
. 2018 Nov;
9(1):4908.
PMID: 30464174
Sulfolobus islandicus is a model microorganism in the TACK superphylum of the Archaea, a key lineage in the evolutionary history of cells. Here we report a genome-wide identification of the...
4.
Arkin A, Cottingham R, Henry C, Harris N, Stevens R, Maslov S, et al.
Nat Biotechnol
. 2018 Jul;
36(7):566-569.
PMID: 29979655
No abstract available.
5.
Antonopoulos D, Assaf R, Aziz R, Brettin T, Bun C, Conrad N, et al.
Brief Bioinform
. 2017 Oct;
20(4):1094-1102.
PMID: 28968762
The Pathosystems Resource Integration Center (PATRIC, www.patricbrc.org) is designed to provide researchers with the tools and services that they need to perform genomic and other 'omic' data analyses. In response...
6.
Davis J, Olsen G, Overbeek R, Vonstein V, Xia F
3 Biotech
. 2017 Mar;
4(3):331-335.
PMID: 28324432
Maintaining consistency in genome annotations is important for supporting many computational tasks, particularly metabolic modeling. The SEED project has implemented a process that improves annotation consistencies across microbial genomes for...
7.
Wattam A, Davis J, Assaf R, Boisvert S, Brettin T, Bun C, et al.
Nucleic Acids Res
. 2016 Dec;
45(D1):D535-D542.
PMID: 27899627
The Pathosystems Resource Integration Center (PATRIC) is the bacterial Bioinformatics Resource Center (https://www.patricbrc.org). Recent changes to PATRIC include a redesign of the web interface and some new services that provide...
8.
Davis J, Gerdes S, Olsen G, Olson R, Pusch G, Shukla M, et al.
Front Microbiol
. 2016 Feb;
7:118.
PMID: 26903996
The ability to build accurate protein families is a fundamental operation in bioinformatics that influences comparative analyses, genome annotation, and metabolic modeling. For several years we have been maintaining protein...
9.
Wetzel M, Olsen G, Chakravartty V, Farrand S
Genome Biol Evol
. 2015 Nov;
7(12):3337-57.
PMID: 26590210
The large repABC plasmids of the order Rhizobiales with Class I quorum-regulated conjugative transfer systems often define the nature of the bacterium that harbors them. These otherwise diverse plasmids contain...
10.
Matthews T, Schmieder R, Silva G, Busch J, Cassman N, Dutilh B, et al.
PLoS One
. 2015 Jun;
10(6):e0126883.
PMID: 26039056
The Salmonella enterica serovars Enteritidis, Dublin, and Gallinarum are closely related but differ in virulence and host range. To identify the genetic elements responsible for these differences and to better...