Dustin Ebert
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Explore the profile of Dustin Ebert including associated specialties, affiliations and a list of published articles.
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9
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4061
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Recent Articles
1.
Feuermann M, Mi H, Gaudet P, Muruganujan A, Lewis S, Ebert D, et al.
Nature
. 2025 Feb;
PMID: 40011791
A comprehensive, computable representation of the functional repertoire of all macromolecules encoded within the human genome is a foundational resource for biology and biomedical research. The Gene Ontology Consortium has...
2.
Markarian N, Van Auken K, Ebert D, Sternberg P
PLoS Comput Biol
. 2024 Mar;
20(3):e1011968.
PMID: 38527066
Enrichment analysis is frequently used in combination with differential expression data to investigate potential commonalities amongst lists of genes and generate hypotheses for further experiments. However, current enrichment analysis approaches...
3.
Balhoff J, Carbon S, Ebert D, Gaudet P, Harris N, Mi H, et al.
Genetics
. 2023 Mar;
224(1).
PMID: 36866529
The Gene Ontology (GO) knowledgebase (http://geneontology.org) is a comprehensive resource concerning the functions of genes and gene products (proteins and noncoding RNAs). GO annotations cover genes from organisms across the...
4.
Liu Z, Mushayahama T, Queme B, Ebert D, Muruganujan A, Mills C, et al.
Nucleic Acids Res
. 2022 May;
50(W1):W57-W65.
PMID: 35640593
The Annotation Query (AnnoQ) (http://annoq.org/) is designed to provide comprehensive and up-to-date functional annotations for human genetic variants. The system is supported by an annotation database with ∼39 million human...
5.
Thomas P, Ebert D, Muruganujan A, Mushayahama T, Albou L, Mi H
Protein Sci
. 2021 Oct;
31(1):8-22.
PMID: 34717010
Phylogenetics is a powerful tool for analyzing protein sequences, by inferring their evolutionary relationships to other proteins. However, phylogenetics analyses can be challenging: they are computationally expensive and must be...
6.
Zhang P, Berardini T, Ebert D, Li Q, Mi H, Muruganujan A, et al.
Plant Direct
. 2021 Jan;
4(12):e00293.
PMID: 33392435
We aim to enable the accurate and efficient transfer of knowledge about gene function gained from and other model organisms to other plant species. This knowledge transfer is frequently challenging...
7.
Mills C, Muruganujan A, Ebert D, Marconett C, Lewinger J, Thomas P, et al.
PLoS One
. 2020 Dec;
15(12):e0243791.
PMID: 33320871
Enhancers are powerful and versatile agents of cell-type specific gene regulation, which are thought to play key roles in human disease. Enhancers are short DNA elements that function primarily as...
8.
Mi H, Ebert D, Muruganujan A, Mills C, Albou L, Mushayamaha T, et al.
Nucleic Acids Res
. 2020 Dec;
49(D1):D394-D403.
PMID: 33290554
PANTHER (Protein Analysis Through Evolutionary Relationships, http://www.pantherdb.org) is a resource for the evolutionary and functional classification of protein-coding genes from all domains of life. The evolutionary classification is based on...
9.
Mi H, Muruganujan A, Huang X, Ebert D, Mills C, Guo X, et al.
Nat Protoc
. 2019 Feb;
14(3):703-721.
PMID: 30804569
The PANTHER classification system ( http://www.pantherdb.org ) is a comprehensive system that combines genomes, gene function classifications, pathways and statistical analysis tools to enable biologists to analyze large-scale genome-wide experimental...
10.
Mi H, Muruganujan A, Ebert D, Huang X, Thomas P
Nucleic Acids Res
. 2018 Nov;
47(D1):D419-D426.
PMID: 30407594
PANTHER (Protein Analysis Through Evolutionary Relationships, http://pantherdb.org) is a resource for the evolutionary and functional classification of genes from organisms across the tree of life. We report the improvements we...