Paul D Thomas
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Explore the profile of Paul D Thomas including associated specialties, affiliations and a list of published articles.
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20356
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Recent Articles
1.
Feuermann M, Mi H, Gaudet P, Muruganujan A, Lewis S, Ebert D, et al.
Nature
. 2025 Feb;
PMID: 40011791
A comprehensive, computable representation of the functional repertoire of all macromolecules encoded within the human genome is a foundational resource for biology and biomedical research. The Gene Ontology Consortium has...
2.
Altenhoff A, Nevers Y, Tran V, Jyothi D, Martin M, Cosentino S, et al.
NAR Genom Bioinform
. 2024 Dec;
6(4):lqae167.
PMID: 39664814
The Quest for Orthologs (QfO) orthology benchmark service (https://orthology.benchmarkservice.org) hosts a wide range of standardized benchmarks for orthology inference evaluation. It is supported and maintained by the QfO consortium, and...
3.
Blum M, Andreeva A, Florentino L, Chuguransky S, Grego T, Hobbs E, et al.
Nucleic Acids Res
. 2024 Nov;
53(D1):D444-D456.
PMID: 39565202
InterPro (https://www.ebi.ac.uk/interpro) is a freely accessible resource for the classification of protein sequences into families. It integrates predictive models, known as signatures, from multiple member databases to classify sequences into...
4.
Langschied F, Bordin N, Cosentino S, Fuentes-Palacios D, Glover N, Hiller M, et al.
Genome Biol Evol
. 2024 Oct;
16(10).
PMID: 39404012
The era of biodiversity genomics is characterized by large-scale genome sequencing efforts that aim to represent each living taxon with an assembled genome. Generating knowledge from this wealth of data...
5.
Martinez K, Agirre J, Akune Y, Aoki-Kinoshita K, Arighi C, Axelsen K, et al.
Database (Oxford)
. 2024 Aug;
2024.
PMID: 39137905
Dynamic changes in protein glycosylation impact human health and disease progression. However, current resources that capture disease and phenotype information focus primarily on the macromolecules within the central dogma of...
6.
Ross K, Bastian F, Buys M, Cook C, DEustachio P, Harrison M, et al.
Bioinform Adv
. 2024 May;
4(1):vbae057.
PMID: 38721398
Motivation: Data reuse is a common and vital practice in molecular biology and enables the knowledge gathered over recent decades to drive discovery and innovation in the life sciences. Much...
7.
8.
Pernet O, Weisenhaus M, Stafylis C, Williams C, Campan M, Pettersson J, et al.
Sci Rep
. 2023 May;
13(1):7612.
PMID: 37165019
Epidemiologic surveillance of circulating SARS-CoV-2 variants is essential to assess impact on clinical outcomes and vaccine efficacy. Whole genome sequencing (WGS), the gold-standard to identify variants, requires significant infrastructure and...
9.
Balhoff J, Carbon S, Ebert D, Gaudet P, Harris N, Mi H, et al.
Genetics
. 2023 Mar;
224(1).
PMID: 36866529
The Gene Ontology (GO) knowledgebase (http://geneontology.org) is a comprehensive resource concerning the functions of genes and gene products (proteins and noncoding RNAs). GO annotations cover genes from organisms across the...
10.
Paysan-Lafosse T, Blum M, Chuguransky S, Grego T, Pinto B, Salazar G, et al.
Nucleic Acids Res
. 2022 Nov;
51(D1):D418-D427.
PMID: 36350672
The InterPro database (https://www.ebi.ac.uk/interpro/) provides an integrative classification of protein sequences into families, and identifies functionally important domains and conserved sites. Here, we report recent developments with InterPro (version 90.0)...