Douglas H Turner
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Explore the profile of Douglas H Turner including associated specialties, affiliations and a list of published articles.
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105
Citations
3438
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Recent Articles
1.
Mittal A, Turner D, Mathews D
J Mol Biol
. 2024 Mar;
436(17):168549.
PMID: 38522645
Nearest neighbor thermodynamic parameters are widely used for RNA and DNA secondary structure prediction and to model thermodynamic ensembles of secondary structures. The Nearest Neighbor Database (NNDB) is a freely...
2.
Zuber J, Schroeder S, Sun H, Turner D, Mathews D
Nucleic Acids Res
. 2022 May;
50(9):5251-5262.
PMID: 35524574
Nearest neighbor parameters for estimating the folding stability of RNA secondary structures are in widespread use. For helices, current parameters penalize terminal AU base pairs relative to terminal GC base...
3.
Zhao J, Kennedy S, Turner D
J Chem Theory Comput
. 2022 Jan;
18(2):1241-1254.
PMID: 34990548
Single-stranded regions of RNA are important for folding of sequences into 3D structures and for design of therapeutics targeting RNA. Prediction of ensembles of 3D structures for single-stranded regions often...
4.
Kauffmann A, Kennedy S, Moss W, Kierzek E, Kierzek R, Turner D
RNA
. 2022 Jan;
28(4):508-522.
PMID: 34983822
Influenza A kills hundreds of thousands of people globally every year and has the potential to generate more severe pandemics. Influenza A's RNA genome and transcriptome provide many potential therapeutic...
5.
Gilski M, Zhao J, Kowiel M, Brzezinski D, Turner D, Jaskolski M
Acta Crystallogr B Struct Sci Cryst Eng Mater
. 2020 Aug;
75(Pt 2):235-245.
PMID: 32830749
Geometrical restraints provide key structural information for the determination of biomolecular structures at lower resolution by experimental methods such as crystallography or cryo-electron microscopy. In this work, restraint targets for...
6.
Zhao J, Kennedy S, Berger K, Turner D
J Chem Theory Comput
. 2020 Jan;
16(3):1968-1984.
PMID: 31904966
RNA and DNA are rapidly emerging as targets for therapeutics and as potential frameworks for nanotechnology. Accurate methods for predicting and designing structures and dynamics of nucleic acids would accelerate...
7.
Simon L, Morandi E, Luganini A, Gribaudo G, Martinez-Sobrido L, Turner D, et al.
Nucleic Acids Res
. 2019 May;
47(13):7003-7017.
PMID: 31053845
The influenza A virus (IAV) is a continuous health threat to humans as well as animals due to its recurring epidemics and pandemics. The IAV genome is segmented and the...
8.
Berger K, Kennedy S, Turner D
Biochemistry
. 2019 Feb;
58(8):1094-1108.
PMID: 30702283
RNA thermodynamics play an important role in determining the two- and three-dimensional structures of RNA. Internal loops of the sequence 5'-GMNU/3'-UNMG are relatively unstable thermodynamically. Here, five duplexes with GU-flanked...
9.
Bottaro S, Bussi G, Kennedy S, Turner D, Lindorff-Larsen K
Sci Adv
. 2018 May;
4(5):eaar8521.
PMID: 29795785
RNA molecules are key players in numerous cellular processes and are characterized by a complex relationship between structure, dynamics, and function. Despite their apparent simplicity, RNA oligonucleotides are very flexible...
10.
Spasic A, Berger K, Chen J, Seetin M, Turner D, Mathews D
Nucleic Acids Res
. 2018 May;
46(10):4883-4892.
PMID: 29718397
RNA folding free energy change nearest neighbor parameters are widely used to predict folding stabilities of secondary structures. They were determined by linear regression to datasets of optical melting experiments...