Donna Karolchik
Overview
Explore the profile of Donna Karolchik including associated specialties, affiliations and a list of published articles.
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Articles
37
Citations
14259
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0
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Recent Articles
1.
Casper J, Zweig A, Villarreal C, Tyner C, Speir M, Rosenbloom K, et al.
Nucleic Acids Res
. 2017 Nov;
46(D1):D762-D769.
PMID: 29106570
The UCSC Genome Browser (https://genome.ucsc.edu) provides a web interface for exploring annotated genome assemblies. The assemblies and annotation tracks are updated on an ongoing basis-12 assemblies and more than 28...
2.
Tyner C, Barber G, Casper J, Clawson H, Diekhans M, Eisenhart C, et al.
Nucleic Acids Res
. 2016 Dec;
45(D1):D626-D634.
PMID: 27899642
Since its 2001 debut, the University of California, Santa Cruz (UCSC) Genome Browser (http://genome.ucsc.edu/) team has provided continuous support to the international genomics and biomedical communities through a web-based, open...
3.
Hinrichs A, Raney B, Speir M, Rhead B, Casper J, Karolchik D, et al.
Bioinformatics
. 2016 Jan;
32(9):1430-2.
PMID: 26740527
Unlabelled: Two new tools on the UCSC Genome Browser web site provide improved ways of combining information from multiple datasets, optionally including the user's own custom track data and/or data...
4.
Speir M, Zweig A, Rosenbloom K, Raney B, Paten B, Nejad P, et al.
Nucleic Acids Res
. 2015 Nov;
44(D1):D717-25.
PMID: 26590259
For the past 15 years, the UCSC Genome Browser (http://genome.ucsc.edu/) has served the international research community by offering an integrated platform for viewing and analyzing information from a large database...
5.
Haeussler M, Karolchik D, Clawson H, Raney B, Rosenbloom K, Fujita P, et al.
PLoS Curr
. 2015 Feb;
6.
PMID: 25685613
Background: With the Ebola epidemic raging out of control in West Africa, there has been a flurry of research into the Ebola virus, resulting in the generation of much genomic...
6.
Rosenbloom K, Armstrong J, Barber G, Casper J, Clawson H, Diekhans M, et al.
Nucleic Acids Res
. 2014 Nov;
43(Database issue):D670-81.
PMID: 25428374
Launched in 2001 to showcase the draft human genome assembly, the UCSC Genome Browser database (http://genome.ucsc.edu) and associated tools continue to grow, providing a comprehensive resource of genome assemblies and...
7.
Haeussler M, Raney B, Hinrichs A, Clawson H, Zweig A, Karolchik D, et al.
Bioinformatics
. 2014 Oct;
31(5):764-6.
PMID: 25348212
Unlabelled: Genome Browser in a Box (GBiB) is a small virtual machine version of the popular University of California Santa Cruz (UCSC) Genome Browser that can be run on a...
8.
Nguyen N, Hickey G, Raney B, Armstrong J, Clawson H, Zweig A, et al.
Bioinformatics
. 2014 Aug;
30(23):3293-301.
PMID: 25138168
Motivation: Researchers now have access to large volumes of genome sequences for comparative analysis, some generated by the plethora of public sequencing projects and, increasingly, from individual efforts. It is...
9.
Karolchik D, Barber G, Casper J, Clawson H, Cline M, Diekhans M, et al.
Nucleic Acids Res
. 2013 Nov;
42(Database issue):D764-70.
PMID: 24270787
The University of California Santa Cruz (UCSC) Genome Browser (http://genome.ucsc.edu) offers online public access to a growing database of genomic sequence and annotations for a large collection of organisms, primarily...
10.
Raney B, Dreszer T, Barber G, Clawson H, Fujita P, Wang T, et al.
Bioinformatics
. 2013 Nov;
30(7):1003-5.
PMID: 24227676
Summary: Track data hubs provide an efficient mechanism for visualizing remotely hosted Internet-accessible collections of genome annotations. Hub datasets can be organized, configured and fully integrated into the University of...