David W Kane
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Explore the profile of David W Kane including associated specialties, affiliations and a list of published articles.
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11
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Recent Articles
1.
Broom B, Ryan M, Brown R, Ikeda F, Stucky M, Kane D, et al.
Cancer Res
. 2017 Nov;
77(21):e23-e26.
PMID: 29092932
Clustered heatmaps are the most frequently used graphics for visualization of molecular profiling data in biology. However, they are generally rendered as static, or only modestly interactive, images. We have...
2.
Li J, Lu Y, Akbani R, Ju Z, Roebuck P, Liu W, et al.
Nat Methods
. 2013 Sep;
10(11):1046-7.
PMID: 24037243
No abstract available.
3.
Kestler H, Muller A, Kraus J, Buchholz M, Gress T, Liu H, et al.
BMC Bioinformatics
. 2008 Jan;
9:67.
PMID: 18230172
Background: Microarray experiments generate vast amounts of data. The functional context of differentially expressed genes can be assessed by querying the Gene Ontology (GO) database via GoMiner. Directed acyclic graph...
4.
Liu H, Zeeberg B, Qu G, Koru A, Ferrucci A, Kahn A, et al.
Bioinformatics
. 2007 Jul;
23(18):2385-90.
PMID: 17660211
Motivation: Affymetrix microarrays are widely used to measure global expression of mRNA transcripts. That technology is based on the concept of a probe set. Individual probes within a probe set...
5.
Riss J, Khanna C, Koo S, Chandramouli G, Yang H, Hu Y, et al.
Cancer Res
. 2006 Jul;
66(14):7216-24.
PMID: 16849569
Cancers have been described as wounds that do not heal, suggesting that the two share common features. By comparing microarray data from a model of renal regeneration and repair (RRR)...
6.
Kane D, Hohman M, Cerami E, McCormick M, Kuhlmman K, Byrd J
BMC Bioinformatics
. 2006 Jun;
7:273.
PMID: 16734914
Background: Agile is an iterative approach to software development that relies on strong collaboration and automation to keep pace with dynamic environments. We have successfully used agile development approaches to...
7.
Zeeberg B, Qin H, Narasimhan S, Sunshine M, Cao H, Kane D, et al.
BMC Bioinformatics
. 2005 Jul;
6:168.
PMID: 15998470
Background: We previously developed GoMiner, an application that organizes lists of 'interesting' genes (for example, under-and overexpressed genes from a microarray experiment) for biological interpretation in the context of the...
8.
Schmier J, Kane D, Halpern M
Contemp Clin Trials
. 2005 May;
26(3):376-85.
PMID: 15911471
Pharmaceutical and device companies are more frequently considering and using electronic data collection (EDC) to collect patient-reported outcomes such as satisfaction and quality of life for clinical trials. The transition...
9.
Zeeberg B, Riss J, Kane D, Bussey K, Uchio E, Linehan W, et al.
BMC Bioinformatics
. 2004 Jun;
5:80.
PMID: 15214961
Background: When processing microarray data sets, we recently noticed that some gene names were being changed inadvertently to non-gene names. Results: A little detective work traced the problem to default...
10.
Feng W, Wang G, Zeeberg B, Guo K, Fojo A, Kane D, et al.
AMIA Annu Symp Proc
. 2004 Jan;
:839.
PMID: 14728344
We have designed and developed a Gene Ontology based navigation tool, GoMiner, which organizes lists of interesting genes from a microarray or a protein array experiment for biological interpretation. It...