David R Rank
Overview
Explore the profile of David R Rank including associated specialties, affiliations and a list of published articles.
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12
Citations
2697
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Recent Articles
1.
Lin C, Marletaz F, Perez-Posada A, Martinez-Garcia P, Schloissnig S, Peluso P, et al.
PLoS Biol
. 2024 Jun;
22(6):e3002661.
PMID: 38829909
Deuterostomes are a monophyletic group of animals that includes Hemichordata, Echinodermata (together called Ambulacraria), and Chordata. The diversity of deuterostome body plans has made it challenging to reconstruct their ancestral...
2.
Hon T, Mars K, Young G, Tsai Y, Karalius J, Landolin J, et al.
Sci Data
. 2020 Nov;
7(1):399.
PMID: 33203859
The PacBio HiFi sequencing method yields highly accurate long-read sequencing datasets with read lengths averaging 10-25 kb and accuracies greater than 99.5%. These accurate long reads can be used to...
3.
Wenger A, Peluso P, Rowell W, Chang P, Hall R, Concepcion G, et al.
Nat Biotechnol
. 2019 Aug;
37(10):1155-1162.
PMID: 31406327
The DNA sequencing technologies in use today produce either highly accurate short reads or less-accurate long reads. We report the optimization of circular consensus sequencing (CCS) to improve the accuracy...
4.
Jiao Y, Peluso P, Shi J, Liang T, Stitzer M, Wang B, et al.
Nature
. 2017 Jun;
546(7659):524-527.
PMID: 28605751
Complete and accurate reference genomes and annotations provide fundamental tools for characterization of genetic and functional variation. These resources facilitate the determination of biological processes and support translation of research...
5.
Chin C, Peluso P, Sedlazeck F, Nattestad M, Concepcion G, Clum A, et al.
Nat Methods
. 2016 Nov;
13(12):1050-1054.
PMID: 27749838
While genome assembly projects have been successful in many haploid and inbred species, the assembly of noninbred or rearranged heterozygous genomes remains a major challenge. To address this challenge, we...
6.
Kim K, Peluso P, Babayan P, Yeadon P, Yu C, Fisher W, et al.
Sci Data
. 2015 May;
1:140045.
PMID: 25977796
Single molecule, real-time (SMRT) sequencing from Pacific Biosciences is increasingly used in many areas of biological research including de novo genome assembly, structural-variant identification, haplotype phasing, mRNA isoform discovery, and...
7.
Travers K, Chin C, Rank D, Eid J, Turner S
Nucleic Acids Res
. 2010 Jun;
38(15):e159.
PMID: 20571086
A novel template design for single-molecule sequencing is introduced, a structure we refer to as a SMRTbell template. This structure consists of a double-stranded portion, containing the insert of interest,...
8.
Hayes K, Vollrath A, Zastrow G, McMillan B, Craven M, Jovanovich S, et al.
Mol Pharmacol
. 2005 Jan;
67(4):1360-8.
PMID: 15662043
Transcriptional profiling via microarrays holds great promise for toxicant classification and hazard prediction. Unfortunately, the use of different microarray platforms, protocols, and informatics often hinders the meaningful comparison of transcriptional...
9.
Thomas R, Rank D, Penn S, Zastrow G, Hayes K, Hu T, et al.
Environ Health Perspect
. 2003 Mar;
110 Suppl 6:919-23.
PMID: 12634120
Traditional models of toxicity have relied on dissecting chemical action into pharmacokinetic and pharmacodynamic processes. However, the integration of genomic information with toxicology will enhance our basic understanding of these...
10.
Thomas R, Rank D, Penn S, Craven M, Drinkwater N, Bradfield C
Methods Enzymol
. 2002 Nov;
357:198-205.
PMID: 12424911
No abstract available.