Daniel C Jones
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Explore the profile of Daniel C Jones including associated specialties, affiliations and a list of published articles.
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19
Citations
371
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Recent Articles
1.
Jones D, Jollands M, DHaenens-Johansson U, Muchnikov A, Tsai T
Opt Express
. 2024 Jun;
32(9):15231-15242.
PMID: 38859179
Hyperspectral photoluminescence (PL) imaging is a powerful technique that can be used to understand the spatial distribution of emitting species in many materials. Volumetric hyperspectral imaging of weakly emitting color...
2.
Jones D, Elz A, Hadadianpour A, Ryu H, Glass D, Newell E
bioRxiv
. 2024 May;
PMID: 38712065
Single-cell spatial transcriptomics promises a highly detailed view of a cell's transcriptional state and microenvironment, yet inaccurate cell segmentation can render this data murky by misattributing large numbers of transcripts...
3.
Tabachnick-Cherny S, Pulliam T, Rodriguez H, Fan X, Hippe D, Jones D, et al.
Clin Cancer Res
. 2023 Oct;
30(6):1189-1199.
PMID: 37851052
Purpose: Merkel cell carcinoma (MCC) is a highly immunogenic skin cancer. Although essentially all MCCs are antigenic through viral antigens or high tumor mutation burden, MCC has a response rate...
4.
Jones D, Danaher P, Kim Y, Beechem J, Gottardo R, Newell E
Cell Rep Methods
. 2023 Jul;
3(6):100507.
PMID: 37426750
A key step in spatial transcriptomics is identifying genes with spatially varying expression patterns. We adopt an information theoretic perspective to this problem by equating the degree of spatial coherence...
5.
Meijers A, Meredith M, Shuckburgh E, Kent E, Munday D, Firing Y, et al.
Philos Trans A Math Phys Eng Sci
. 2023 May;
381(2249):20220070.
PMID: 37150199
The 5-year Ocean Regulation of Climate by Heat and Carbon Sequestration and Transports (ORCHESTRA) programme and its 1-year extension ENCORE (ENCORE is the National Capability ORCHESTRA Extension) was an approximately...
6.
Andersson T, Hosking J, Perez-Ortiz M, Paige B, Elliott A, Russell C, et al.
Nat Commun
. 2021 Aug;
12(1):5124.
PMID: 34446701
Anthropogenic warming has led to an unprecedented year-round reduction in Arctic sea ice extent. This has far-reaching consequences for indigenous and local communities, polar ecosystems, and global climate, motivating the...
7.
Morrison A, Waugh D, Hogg A, Jones D, Abernathey R
Ann Rev Mar Sci
. 2021 Aug;
14:405-430.
PMID: 34437811
Ocean ventilation is the transfer of tracers and young water from the surface down into the ocean interior. The tracers that can be transported to depth include anthropogenic heat and...
8.
Jones D, Ceia F, Murphy E, Delord K, Furness R, Verdy A, et al.
Glob Chang Biol
. 2021 Aug;
27(22):5773-5785.
PMID: 34386992
Ocean circulation connects geographically distinct ecosystems across a wide range of spatial and temporal scales via exchanges of physical and biogeochemical properties. Remote oceanographic processes can be especially important for...
9.
Jones D, Ruzzo W
NAR Genom Bioinform
. 2021 May;
3(2):lqab046.
PMID: 34056596
The analysis of mRNA transcript abundance with RNA-Seq is a central tool in molecular biology research, but often analyses fail to account for the uncertainty in these estimates, which can...
10.
Hussein A, Wang Y, Mathieu J, Margaretha L, Song C, Jones D, et al.
Dev Cell
. 2020 Jan;
52(2):236-250.e7.
PMID: 31991105
Regulation of embryonic diapause, dormancy that interrupts the tight connection between developmental stage and time, is still poorly understood. Here, we characterize the transcriptional and metabolite profiles of mouse diapause...