ceslovas Venclovas
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Explore the profile of ceslovas Venclovas including associated specialties, affiliations and a list of published articles.
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87
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3420
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Recent Articles
1.
Timinskas K, Timinskas A, Venclovas C
Comput Struct Biotechnol J
. 2025 Feb;
27:401-410.
PMID: 39906160
Translesion DNA synthesis (TLS) is typically performed by inherently error-prone Y-family DNA polymerases. Extensively studied Pol V mutasome, composed of UmuC, an UmuD' dimer and RecA is an example of...
2.
Olechnovic K, Banciul R, Dapkunas J, Venclovas C
Proteins
. 2025 Jan;
PMID: 39748638
FTDMP is a software framework for biomolecular docking and scoring. It can perform docking of subunits containing one or more protein, DNA, or RNA chains, followed by subsequent scoring of...
3.
Santos J, Timinskas K, Ramudzuli A, Lamers M, Venclovas C, Warner D, et al.
J Biol Chem
. 2024 Dec;
301(2):108108.
PMID: 39706264
The mycobacterial mutasome-comprising ImuA', ImuB, and DnaE2-has been implicated in DNA damage-induced mutagenesis in Mycobacterium tuberculosis. ImuB, which is predicted to enable mutasome function via its interaction with the β...
4.
Dapkunas J, Timinskas A, Olechnovic K, Tomkuviene M, Venclovas C
Nucleic Acids Res
. 2024 Apr;
52(W1):W264-W271.
PMID: 38619046
Structure-resolved protein interactions with other proteins, peptides and nucleic acids are key for understanding molecular mechanisms. The PPI3D web server enables researchers to query preprocessed and clustered structural data, analyze...
5.
Manakova E, Golovinas E, Poceviciute R, Sasnauskas G, Silanskas A, Rutkauskas D, et al.
Nucleic Acids Res
. 2024 Jan;
52(5):2530-2545.
PMID: 38197228
Argonaute (Ago) proteins are present in all three domains of life (bacteria, archaea and eukaryotes). They use small (15-30 nucleotides) oligonucleotide guides to bind complementary nucleic acid targets and are...
6.
Mogila I, Tamulaitiene G, Keda K, Timinskas A, Ruksenaite A, Sasnauskas G, et al.
Science
. 2023 Nov;
382(6674):1036-1041.
PMID: 38033086
Prokaryotic type III CRISPR-Cas antiviral systems employ cyclic oligoadenylate (cA) signaling to activate a diverse range of auxiliary proteins that reinforce the CRISPR-Cas defense. Here we characterize a class of...
7.
Lensink M, Brysbaert G, Raouraoua N, Bates P, Giulini M, Honorato R, et al.
Proteins
. 2023 Oct;
91(12):1658-1683.
PMID: 37905971
We present the results for CAPRI Round 54, the 5th joint CASP-CAPRI protein assembly prediction challenge. The Round offered 37 targets, including 14 homodimers, 3 homo-trimers, 13 heterodimers including 3...
8.
Olechnovic K, Valancauskas L, Dapkunas J, Venclovas C
Proteins
. 2023 Aug;
91(12):1724-1733.
PMID: 37578163
Proteins often function as part of permanent or transient multimeric complexes, and understanding function of these assemblies requires knowledge of their three-dimensional structures. While the ability of AlphaFold to predict...
9.
Gessner S, Martin Z, Reiche M, Santos J, Dinkele R, Ramudzuli A, et al.
Elife
. 2023 Aug;
12.
PMID: 37530405
A DNA damage-inducible mutagenic gene cassette has been implicated in the emergence of drug resistance in during anti-tuberculosis (TB) chemotherapy. However, the molecular composition and operation of the encoded 'mycobacterial...
10.
Olechnovic K, Venclovas C
Proteins
. 2023 Jul;
91(12):1879-1888.
PMID: 37482904
We present VoroIF-GNN (Voronoi InterFace Graph Neural Network), a novel method for assessing inter-subunit interfaces in a structural model of a protein-protein complex, relying solely on the input structure without...