Carlos Rodriguez-Penagos
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Explore the profile of Carlos Rodriguez-Penagos including associated specialties, affiliations and a list of published articles.
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Articles
6
Citations
446
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Recent Articles
1.
Krallinger M, Izarzugaza J, Rodriguez-Penagos C, Valencia A
BMC Bioinformatics
. 2009 Sep;
10 Suppl 8:S1.
PMID: 19758464
Background: There is a considerable interest in characterizing the biological role of specific protein residue substitutions through mutagenesis experiments. Additionally, recent efforts related to the detection of disease-associated SNPs motivated...
2.
Krallinger M, Rodriguez-Penagos C, Tendulkar A, Valencia A
Nucleic Acids Res
. 2009 Jun;
37(Web Server issue):W160-5.
PMID: 19520768
There is an increasing interest in using literature mining techniques to complement information extracted from annotation databases or generated by bioinformatics applications. Here we present PLAN2L, a web-based online search...
3.
Leitner F, Krallinger M, Rodriguez-Penagos C, Hakenberg J, Plake C, Kuo C, et al.
Genome Biol
. 2008 Oct;
9 Suppl 2:S6.
PMID: 18834497
We introduce the first meta-service for information extraction in molecular biology, the BioCreative MetaServer (BCMS; http://bcms.bioinfo.cnio.es/). This prototype platform is a joint effort of 13 research groups and provides automatically...
4.
Krallinger M, Leitner F, Rodriguez-Penagos C, Valencia A
Genome Biol
. 2008 Oct;
9 Suppl 2:S4.
PMID: 18834495
Background: The biomedical literature is the primary information source for manual protein-protein interaction annotations. Text-mining systems have been implemented to extract binary protein interactions from articles, but a comprehensive comparison...
5.
Gama-Castro S, Jimenez-Jacinto V, Peralta-Gil M, Santos-Zavaleta A, Penaloza-Spinola M, Contreras-Moreira B, et al.
Nucleic Acids Res
. 2007 Dec;
36(Database issue):D120-4.
PMID: 18158297
RegulonDB (http://regulondb.ccg.unam.mx/) is the primary reference database offering curated knowledge of the transcriptional regulatory network of Escherichia coli K12, currently the best-known electronically encoded database of the genetic regulatory network...
6.
Rodriguez-Penagos C, Salgado H, Martinez-Flores I, Collado-Vides J
BMC Bioinformatics
. 2007 Aug;
8:293.
PMID: 17683642
Background: Manual curation of biological databases, an expensive and labor-intensive process, is essential for high quality integrated data. In this paper we report the implementation of a state-of-the-art Natural Language...