Martin Krallinger
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Explore the profile of Martin Krallinger including associated specialties, affiliations and a list of published articles.
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Articles
49
Citations
1584
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Recent Articles
1.
Miranda-Escalada A, Mehryary F, Luoma J, Estrada-Zavala D, Gasco L, Pyysalo S, et al.
Database (Oxford)
. 2023 Nov;
2023.
PMID: 38015956
It is getting increasingly challenging to efficiently exploit drug-related information described in the growing amount of scientific literature. Indeed, for drug-gene/protein interactions, the challenge is even bigger, considering the scattered...
2.
Mateu-Sanz M, Fuenteslopez C, Uribe-Gomez J, Haugen H, Pandit A, Ginebra M, et al.
Trends Biotechnol
. 2023 Oct;
42(4):402-417.
PMID: 37858386
The surge in 'Big data' has significantly influenced biomaterials research and development, with vast data volumes emerging from clinical trials, scientific literature, electronic health records, and other sources. Biocompatibility is...
3.
Chatr-Aryamontri A, Hirschman L, Ross K, Oughtred R, Krallinger M, Dolinski K, et al.
Database (Oxford)
. 2022 Oct;
2022.
PMID: 36197453
The coronavirus disease 2019 (COVID-19) pandemic has compelled biomedical researchers to communicate data in real time to establish more effective medical treatments and public health policies. Nontraditional sources such as...
4.
Gonzalez-Hernandez G, Krallinger M, Munoz M, Rodriguez-Esteban R, Uzuner O, Hirschman L
Database (Oxford)
. 2022 Sep;
2022.
PMID: 36050787
Monitoring drug safety is a central concern throughout the drug life cycle. Information about toxicity and adverse events is generated at every stage of this life cycle, and stakeholders have...
5.
Vazquez M, Krallinger M, Leitner F, Kuiper M, Valencia A, Laegreid A
Biochim Biophys Acta Gene Regul Mech
. 2021 Dec;
1865(1):194778.
PMID: 34875418
The regulation of gene transcription by transcription factors is a fundamental biological process, yet the relations between transcription factors (TF) and their target genes (TG) are still only sparsely covered...
6.
Hobbs E, Goralski S, Mitchell A, Simpson A, Leka D, Kotey E, et al.
Front Res Metr Anal
. 2021 Jul;
6:674205.
PMID: 34327299
Analysis of high-throughput experiments in the life sciences frequently relies upon standardized information about genes, gene products, and other biological entities. To provide this information, expert curators are increasingly relying...
7.
Armengol-Estape J, Soares F, Marimon M, Krallinger M
Genomics Inform
. 2019 Jul;
17(2):e15.
PMID: 31307130
Automatically detecting mentions of pharmaceutical drugs and chemical substances is key for the subsequent extraction of relations of chemicals with other biomedical entities such as genes, proteins, diseases, adverse reactions...
8.
Perez-Perez M, Perez-Rodriguez G, Blanco-Miguez A, Fdez-Riverola F, Valencia A, Krallinger M, et al.
J Cheminform
. 2019 Jun;
11(1):42.
PMID: 31236786
Background: Shared tasks and community challenges represent key instruments to promote research, collaboration and determine the state of the art of biomedical and chemical text mining technologies. Traditionally, such tasks...
9.
Sanchez-Valle J, Tejero H, Ibanez K, Portero J, Krallinger M, Al-Shahrour F, et al.
Sci Rep
. 2017 Jul;
7(1):4474.
PMID: 28667284
Epidemiological studies indicate that patients suffering from Alzheimer's disease have a lower risk of developing lung cancer, and suggest a higher risk of developing glioblastoma. Here we explore the molecular...
10.
Canada A, Capella-Gutierrez S, Rabal O, Oyarzabal J, Valencia A, Krallinger M
Nucleic Acids Res
. 2017 May;
45(W1):W484-W489.
PMID: 28531339
A considerable effort has been devoted to retrieve systematically information for genes and proteins as well as relationships between them. Despite the importance of chemical compounds and drugs as a...