Benjamin D Lee
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Explore the profile of Benjamin D Lee including associated specialties, affiliations and a list of published articles.
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10
Citations
98
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Recent Articles
1.
Koonin E, Lee B
Nucleic Acids Res
. 2024 Dec;
53(3).
PMID: 39727156
Viroids, the agents of several plant diseases, are the smallest and simplest known replicators that consist of covalently closed circular (ccc) RNA molecules between 200 and 400 nucleotides in size....
2.
Kuhn J, Botella L, de la Pena M, Vainio E, Krupovic M, Lee B, et al.
J Virol
. 2024 Jun;
98(7):e0083124.
PMID: 38856119
Fungi harbor a vast diversity of mobile genetic elements (MGEs). Recently, novel fungal MGEs, tentatively referred to as 'ambiviruses,' were described. 'Ambiviruses' have single-stranded RNA genomes of about 4-5 kb...
3.
Lee B, Neri U, Roux S, Wolf Y, Camargo A, Krupovic M, et al.
Cell
. 2023 Jan;
186(3):646-661.e4.
PMID: 36696902
Viroids and viroid-like covalently closed circular (ccc) RNAs are minimal replicators that typically encode no proteins and hijack cellular enzymes for replication. The extent and diversity of viroid-like agents are...
4.
Lee B, Gitter A, Greene C, Raschka S, Maguire F, Titus A, et al.
PLoS Comput Biol
. 2022 Mar;
18(3):e1009803.
PMID: 35324884
No abstract available.
5.
Lee B, Koonin E
Life (Basel)
. 2022 Jan;
12(1).
PMID: 35054497
Viroids are a unique class of plant pathogens that consist of small circular RNA molecules, between 220 and 450 nucleotides in size. Viroids encode no proteins and are the smallest...
6.
Lee B, Neri U, Oh C, Simmonds P, Koonin E
Nucleic Acids Res
. 2021 Nov;
50(D1):D432-D438.
PMID: 34751403
We introduce ViroidDB, a value-added database that attempts to collect all known viroid and viroid-like circular RNA sequences into a single resource. Spanning about 10 000 unique sequences, ViroidDB includes...
7.
Lee B, Gilmer B, Lang S, Guttmann D
Arthrosc Tech
. 2020 Jan;
8(11):e1373-e1378.
PMID: 31890510
Treatment of full-thickness rotator cuff tears vary in surgical technique dependent on the amount of retraction of the rotator cuff and/or delamination of the soft tissue. The described technique addresses...
8.
Lee B, Timony M, Ruiz P
Nucleic Acids Res
. 2019 Jun;
47(W1):W20-W25.
PMID: 31170285
Raw DNA sequences contain an immense amount of meaningful biological information. However, these sequences are hard for humans to intuitively interpret. To solve this problem, a number of methods have...
9.
10.
Lee B
Bioinformatics
. 2018 Sep;
35(8):1425-1426.
PMID: 30247632
Summary: Squiggle is a software tool that automatically generates interactive web-based two-dimensional graphical representations of raw DNA sequences. Built with ease of use in mind, Squiggle implements several prior sequence...