Zhang H, Maillo A, Khan S, Martinez-de-Morentin X, Lehmann R, Gomez-Cabrero D
Comput Struct Biotechnol J. 2024; 23:3989-3998.
PMID: 39582890
PMC: 11584522.
DOI: 10.1016/j.csbj.2024.10.034.
Kuckertz P, Gopfert J, Karras O, Neuroth D, Schonau J, Pueblas R
Patterns (N Y). 2024; 5(11):101064.
PMID: 39568472
PMC: 11573911.
DOI: 10.1016/j.patter.2024.101064.
van Kampen A, Mahamune U, Jongejan A, van Schaik B, Balashova D, Lashgari D
Nat Commun. 2024; 15(1):8117.
PMID: 39284801
PMC: 11405857.
DOI: 10.1038/s41467-024-52446-8.
Gallagher K, Creswell R, Lambert B, Robinson M, Lei C, Mirams G
PLoS Comput Biol. 2024; 20(9):e1012410.
PMID: 39264985
PMC: 11392269.
DOI: 10.1371/journal.pcbi.1012410.
Moreira-Filho J, Ranganath D, Conway M, Schmitt C, Kleinstreuer N, Mansouri K
J Cheminform. 2024; 16(1):101.
PMID: 39152469
PMC: 11330086.
DOI: 10.1186/s13321-024-00894-1.
Ten simple rules for managing laboratory information.
Berezin C, Aguilera L, Billerbeck S, Bourne P, Densmore D, Freemont P
PLoS Comput Biol. 2023; 19(12):e1011652.
PMID: 38060459
PMC: 10703290.
DOI: 10.1371/journal.pcbi.1011652.
Making Biomedical Research Software FAIR: Actionable Step-by-step Guidelines with a User-support Tool.
Patel B, Soundarajan S, Menager H, Hu Z
Sci Data. 2023; 10(1):557.
PMID: 37612312
PMC: 10447492.
DOI: 10.1038/s41597-023-02463-x.
Ten quick tips for avoiding pitfalls in multi-omics data integration analyses.
Chicco D, Cumbo F, Angione C
PLoS Comput Biol. 2023; 19(7):e1011224.
PMID: 37410704
PMC: 10325053.
DOI: 10.1371/journal.pcbi.1011224.
Ten simple rules for working with other people's code.
Pilgrim C, Kent P, Hosseini K, Chalstrey E
PLoS Comput Biol. 2023; 19(4):e1011031.
PMID: 37079492
PMC: 10118162.
DOI: 10.1371/journal.pcbi.1011031.
Ten simple rules for providing bioinformatics support within a hospital.
Chicco D, Jurman G
BioData Min. 2023; 16(1):6.
PMID: 36823520
PMC: 9948383.
DOI: 10.1186/s13040-023-00326-0.
Evaluating LC-HRMS metabolomics data processing software using FAIR principles for research software.
Du X, Dastmalchi F, Ye H, Garrett T, Diller M, Liu M
Metabolomics. 2023; 19(2):11.
PMID: 36745241
DOI: 10.1007/s11306-023-01974-3.
Ten simple rules for reporting a bug.
Haller B
PLoS Comput Biol. 2022; 18(10):e1010540.
PMID: 36227808
PMC: 9562159.
DOI: 10.1371/journal.pcbi.1010540.
Advancing code sharing in the computational biology community.
Cadwallader L, Mac Gabhann F, Papin J, Pitzer V
PLoS Comput Biol. 2022; 18(6):e1010193.
PMID: 35653366
PMC: 9162310.
DOI: 10.1371/journal.pcbi.1010193.
Documenting research software in engineering science.
Hermann S, Fehr J
Sci Rep. 2022; 12(1):6567.
PMID: 35449149
PMC: 9023583.
DOI: 10.1038/s41598-022-10376-9.
Ten simple rules for making a software tool workflow-ready.
Brack P, Crowther P, Soiland-Reyes S, Owen S, Lowe D, Williams A
PLoS Comput Biol. 2022; 18(3):e1009823.
PMID: 35324885
PMC: 8946750.
DOI: 10.1371/journal.pcbi.1009823.
A large-scale study on research code quality and execution.
Trisovic A, Lau M, Pasquier T, Crosas M
Sci Data. 2022; 9(1):60.
PMID: 35190569
PMC: 8861064.
DOI: 10.1038/s41597-022-01143-6.
Ten simple rules for researchers who want to develop web apps.
Saia S, Nelson N, Young S, Parham S, Vandegrift M
PLoS Comput Biol. 2022; 18(1):e1009663.
PMID: 34990469
PMC: 8735566.
DOI: 10.1371/journal.pcbi.1009663.
Ten simple rules on writing clean and reliable open-source scientific software.
Hunter-Zinck H, Fioravante de Siqueira A, Vasquez V, Barnes R, Martinez C
PLoS Comput Biol. 2021; 17(11):e1009481.
PMID: 34762641
PMC: 8584773.
DOI: 10.1371/journal.pcbi.1009481.
Ten simple rules to make your publication look better.
Ehrhart F, Evelo C
PLoS Comput Biol. 2021; 17(5):e1008938.
PMID: 34014916
PMC: 8136654.
DOI: 10.1371/journal.pcbi.1008938.
Ten simple rules for getting started with command-line bioinformatics.
Brandies P, Hogg C
PLoS Comput Biol. 2021; 17(2):e1008645.
PMID: 33600404
PMC: 7891784.
DOI: 10.1371/journal.pcbi.1008645.
