Anna Zhukova
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Explore the profile of Anna Zhukova including associated specialties, affiliations and a list of published articles.
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30
Citations
687
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Recent Articles
1.
Hawkey J, Frezal L, Tran Dien A, Zhukova A, Brown D, Chattaway M, et al.
Nat Commun
. 2024 Dec;
15(1):10143.
PMID: 39658567
Paratyphoid B fever (PTB) is caused by an invasive lineage (phylogroup 1, PG1) of Salmonella enterica serotype Paratyphi B (SPB). However, little was known about the global population structure, geographic...
2.
Xie R, Adam D, Hu S, Cowling B, Gascuel O, Zhukova A, et al.
Mol Biol Evol
. 2024 Nov;
41(11).
PMID: 39497507
Phylodynamics is central to understanding infectious disease dynamics through the integration of genomic and epidemiological data. Despite advancements, including the application of deep learning to overcome computational limitations, significant challenges...
3.
Maestri R, Perez-Lamarque B, Zhukova A, Morlon H
Elife
. 2024 Aug;
13.
PMID: 39196812
Several coronaviruses infect humans, with three, including the SARS-CoV2, causing diseases. While coronaviruses are especially prone to induce pandemics, we know little about their evolutionary history, host-to-host transmissions, and biogeography....
4.
Morel M, Zhukova A, Lemoine F, Gascuel O
Genome Biol Evol
. 2024 Mar;
16(4).
PMID: 38451738
Evolutionary convergences are observed at all levels, from phenotype to DNA and protein sequences, and changes at these different levels tend to be correlated. Notably, convergent mutations can lead to...
5.
Anjou C, Lotoux A, Zhukova A, Royer M, Caulat L, Capuzzo E, et al.
PLoS Pathog
. 2024 Feb;
20(2):e1012001.
PMID: 38330058
Cells are unceasingly confronted by oxidative stresses that oxidize proteins on their cysteines. The thioredoxin (Trx) system, which is a ubiquitous system for thiol and protein repair, is composed of...
6.
Zhukova A, Hecht F, Maday Y, Gascuel O
Syst Biol
. 2023 Sep;
72(6):1387-1402.
PMID: 37703335
Multi-type birth-death (MTBD) models are phylodynamic analogies of compartmental models in classical epidemiology. They serve to infer such epidemiological parameters as the average number of secondary infections Re and the...
7.
Holtz A, Baele G, Bourhy H, Zhukova A
Nat Commun
. 2023 Jul;
14(1):4247.
PMID: 37460566
Despite the rapid growth in viral genome sequencing, statistical methods face challenges in handling historical viral endemic diseases with large amounts of underutilized partial sequence data. We propose a phylogenetic...
8.
Zhukova A, Dunn D, Gascuel O
Viruses
. 2023 Jun;
15(6).
PMID: 37376544
A deeper understanding of HIV-1 transmission and drug resistance mechanisms can lead to improvements in current treatment policies. However, the rates at which HIV-1 drug resistance mutations (DRMs) are acquired...
9.
BioSimulators: a central registry of simulation engines and services for recommending specific tools
Shaikh B, Smith L, Vasilescu D, Marupilla G, Wilson M, Agmon E, et al.
Nucleic Acids Res
. 2022 May;
50(W1):W108-W114.
PMID: 35524558
Computational models have great potential to accelerate bioscience, bioengineering, and medicine. However, it remains challenging to reproduce and reuse simulations, in part, because the numerous formats and methods for simulating...
10.
Seabra S, Libin P, Theys K, Zhukova A, Potter B, Nebenzahl-Guimaraes H, et al.
Virus Evol
. 2022 Apr;
8(1):veac029.
PMID: 35478717
The Zika virus (ZIKV) disease caused a public health emergency of international concern that started in February 2016. The overall number of ZIKV-related cases increased until November 2016, after which...