Heterochromatic Stellate Gene Cluster in Drosophila Melanogaster: Structure and Molecular Evolution
Overview
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The 30-kb cluster comprising close to 20 copies of tandemly repeated Stellate genes was localized in the distal heterochromatin of the X chromosome. Of 10 sequenced genes, nine contain undamaged open reading frames with extensive similarity to protein kinase CK2 beta-subunit; one gene is interrupted by an insertion. The heterochromatic array of Stellate repeats is divided into three regions by a 4.5-kb DNA segment of unknown origin and a retrotransposon insertion: the A region (approximately 14 Stellate genes), the adjacent B region (approximately three Stellate genes), and the C region (about four Stellate genes). The sequencing of Stellate copies located along the discontinuous cluster revealed a complex pattern of diversification. The lowest level of divergence was detected in nearby Stellate repeats. The marginal copies of the A region, truncated or interrupted by an insertion, escaped homogenization and demonstrated high levels of divergence. Comparison of copies in the B and C regions, which are separated by a retrotransposon insertion, revealed a high level of diversification. These observations suggest that homogenization takes place in the Stellate cluster, but that inserted sequences may impede this process.
Genetic variation in recalcitrant repetitive regions of the genome.
Shukla H, Chakraborty M, Emerson J bioRxiv. 2024; .
PMID: 38915508 PMC: 11195212. DOI: 10.1101/2024.06.11.598575.
The Genome Lacks the - System.
De Grassi A, Tritto P, Palumbo V, Bozzetti M, Berloco M Cells. 2022; 11(23).
PMID: 36496985 PMC: 9741089. DOI: 10.3390/cells11233725.
Genes and the piRNA Pathway in Speciation and Reproductive Isolation of .
Adashev V, Kotov A, Bazylev S, Shatskikh A, Aravin A, Olenina L Front Genet. 2021; 11:610665.
PMID: 33584811 PMC: 7874207. DOI: 10.3389/fgene.2020.610665.
Kolesnikova T, Kolodyazhnaya A, Pokholkova G, Schubert V, Dovgan V, Romanenko S Cells. 2020; 9(6).
PMID: 32575592 PMC: 7349278. DOI: 10.3390/cells9061501.
Heterochromatin-Enriched Assemblies Reveal the Sequence and Organization of the Y Chromosome.
Chang C, Larracuente A Genetics. 2018; 211(1):333-348.
PMID: 30420487 PMC: 6325706. DOI: 10.1534/genetics.118.301765.