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MORE-Q, a Dataset for Molecular Olfactorial Receptor Engineering by Quantum Mechanics

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Journal Sci Data
Specialty Science
Date 2025 Feb 22
PMID 39987132
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Abstract

We introduce the MORE-Q dataset, a quantum-mechanical (QM) dataset encompassing the structural and electronic data of non-covalent molecular sensors formed by combining 18 mucin-derived olfactorial receptors with 102 body odor volatilome (BOV) molecules. To have a better understanding of their intra- and inter-molecular interactions, we have performed accurate QM calculations in different stages of the sensor design and, accordingly, MORE-Q splits into three subsets: i) MORE-Q-G1: QM data of 18 receptors and 102 BOV molecules, ii) MORE-Q-G2: QM data of 23,838 BOV-receptor configurations, and iii) MORE-Q-G3: QM data of 1,836 BOV-receptor-graphene systems. Each subset involves geometries optimized using GFN2-xTB with D4 dispersion correction and up to 39 physicochemical properties, including global and local properties as well as binding features, all computed at the tightly converged PBE+D3 level of theory. By addressing BOV-receptor-graphene systems from a QM perspective, MORE-Q can serve as a benchmark dataset for state-of-the-art machine learning methods developed to predict binding features. This, in turn, can provide valuable insights for developing the next-generation mucin-derived olfactory receptor sensing devices.

Citing Articles

MORE-Q, a dataset for molecular olfactorial receptor engineering by quantum mechanics.

Chen L, Medrano Sandonas L, Traber P, Dianat A, Tverdokhleb N, Hurevich M Sci Data. 2025; 12(1):324.

PMID: 39987132 PMC: 11846975. DOI: 10.1038/s41597-025-04616-6.

References
1.
Bannwarth C, Ehlert S, Grimme S . GFN2-xTB-An Accurate and Broadly Parametrized Self-Consistent Tight-Binding Quantum Chemical Method with Multipole Electrostatics and Density-Dependent Dispersion Contributions. J Chem Theory Comput. 2019; 15(3):1652-1671. DOI: 10.1021/acs.jctc.8b01176. View

2.
Meng J, Li Z . Schottky-Contacted Nanowire Sensors. Adv Mater. 2020; 32(28):e2000130. DOI: 10.1002/adma.202000130. View

3.
Morgan J . Joy of super smeller: sebum clues for PD diagnostics. Lancet Neurol. 2017; 15(2):138-139. DOI: 10.1016/S1474-4422(15)00396-8. View

4.
Triller A, Boulden E, Churchill A, Hatt H, Englund J, Spehr M . Odorant-receptor interactions and odor percept: a chemical perspective. Chem Biodivers. 2008; 5(6):862-86. DOI: 10.1002/cbdv.200890101. View

5.
Bodelier A, Smolinska A, Baranska A, Dallinga J, Mujagic Z, Vanhees K . Volatile Organic Compounds in Exhaled Air as Novel Marker for Disease Activity in Crohn's Disease: A Metabolomic Approach. Inflamm Bowel Dis. 2015; 21(8):1776-85. DOI: 10.1097/MIB.0000000000000436. View