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Structural Development of the HIV-1 Apex-directed PGT145-PGDM1400 Antibody Lineage

Abstract

Broadly neutralizing antibodies (bNAbs) targeting the apex of the HIV-1-envelope (Env) trimer comprise the most potent category of HIV-1 bNAbs and have emerged as promising therapeutics. Here, we investigate the development of the HIV-1 apex-directed PGT145-PGDM1400 antibody lineage and report cryo-EM structures at 3.4 Å resolution of PGDM1400 and of an improved PGT145 variant (PGT145-R100aS), each bound to the BG505 Env trimer. Cross-species-based engineering improves PGT145 IC breadth to near that of PGDM1400. Despite similar breadth and potency, the two antibodies differ in their residue-level interactions with important apex features, including N160 glycans and apex cavity, with residue 100i of PGT145 (sulfated tyrosine) penetrating ∼7 Å farther than residue 100i of PGDM1400 (aspartic acid). While apex-directed bNAbs from other donors use maturation pathways that often converge on analogous residue-level recognition, our results demonstrate that divergent residue-level recognition can occur within the same lineage, thereby enabling improved coverage of escape variants.

References
1.
Landais E, Huang X, Havenar-Daughton C, Murrell B, Price M, Wickramasinghe L . Broadly Neutralizing Antibody Responses in a Large Longitudinal Sub-Saharan HIV Primary Infection Cohort. PLoS Pathog. 2016; 12(1):e1005369. PMC: 4713061. DOI: 10.1371/journal.ppat.1005369. View

2.
Zhang B, Gollapudi D, Gorman J, ODell S, Damron L, McKee K . Engineering of HIV-1 neutralizing antibody CAP256V2LS for manufacturability and improved half life. Sci Rep. 2022; 12(1):17876. PMC: 9596707. DOI: 10.1038/s41598-022-22435-2. View

3.
Mason R, Welles H, Adams C, Chakrabarti B, Gorman J, Zhou T . Targeted Isolation of Antibodies Directed against Major Sites of SIV Env Vulnerability. PLoS Pathog. 2016; 12(4):e1005537. PMC: 4827850. DOI: 10.1371/journal.ppat.1005537. View

4.
He L, Lin X, de Val N, Saye-Francisco K, Mann C, Augst R . Hidden Lineage Complexity of Glycan-Dependent HIV-1 Broadly Neutralizing Antibodies Uncovered by Digital Panning and Native-Like gp140 Trimer. Front Immunol. 2017; 8:1025. PMC: 5573810. DOI: 10.3389/fimmu.2017.01025. View

5.
Croll T . ISOLDE: a physically realistic environment for model building into low-resolution electron-density maps. Acta Crystallogr D Struct Biol. 2018; 74(Pt 6):519-530. PMC: 6096486. DOI: 10.1107/S2059798318002425. View