» Articles » PMID: 39171914

Physiological Significance of the Two Isoforms of Initiator TRNAs in

Overview
Journal J Bacteriol
Specialty Microbiology
Date 2024 Aug 22
PMID 39171914
Authors
Affiliations
Soon will be listed here.
Abstract

Importance: harbors four initiator tRNA (i-tRNA) genes: three of these at and the fourth one at loci. In B, all four genes encode i-tRNA. In K, because of a single-nucleotide polymorphism, metY encodes a variant, i-tRNA, having an A in place of G at position 46 of i-tRNA sequence in metY. We show that G46 confers stability to i-tRNA. The strains sustained on i-tRNA have a growth fitness advantage over those sustained on i-tRNA. Strains harboring (B mimic) or (K mimic) show that while in the nutrient-rich media, the K mimic is outcompeted rapidly; in the nutrient-poor medium, the K mimic is outcompeted less rapidly.

References
1.
van der Spoel D, Lindahl E, Hess B, Groenhof G, Mark A, Berendsen H . GROMACS: fast, flexible, and free. J Comput Chem. 2005; 26(16):1701-18. DOI: 10.1002/jcc.20291. View

2.
Samhita L, Shetty S, Varshney U . Unconventional initiator tRNAs sustain Escherichia coli. Proc Natl Acad Sci U S A. 2012; 109(32):13058-63. PMC: 3420168. DOI: 10.1073/pnas.1207868109. View

3.
Zgarbova M, Otyepka M, Sponer J, Mladek A, Banas P, Cheatham 3rd T . Refinement of the Cornell et al. Nucleic Acids Force Field Based on Reference Quantum Chemical Calculations of Glycosidic Torsion Profiles. J Chem Theory Comput. 2011; 7(9):2886-2902. PMC: 3171997. DOI: 10.1021/ct200162x. View

4.
Chan P, Lowe T . GtRNAdb: a database of transfer RNA genes detected in genomic sequence. Nucleic Acids Res. 2008; 37(Database issue):D93-7. PMC: 2686519. DOI: 10.1093/nar/gkn787. View

5.
Barraud P, Schmitt E, Mechulam Y, Dardel F, Tisne C . A unique conformation of the anticodon stem-loop is associated with the capacity of tRNAfMet to initiate protein synthesis. Nucleic Acids Res. 2008; 36(15):4894-901. PMC: 2528185. DOI: 10.1093/nar/gkn462. View