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Subfunctionalisation and Self-repression of Duplicated E1 Homologues Finetunes Soybean Flowering and Adaptation

Overview
Journal Nat Commun
Specialty Biology
Date 2024 Jul 22
PMID 39039090
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Abstract

Soybean is a photoperiod-sensitive staple crop. Its photoperiodic flowering has major consequences for latitudinal adaptation and grain yield. Here, we identify and characterise a flowering locus named Time of flower 4b (Tof4b), which encodes E1-Like b (E1Lb), a homologue of the key soybean floral repressor E1. Tof4b protein physically associates with the promoters of two FLOWERING LOCUS T (FT) genes to repress their transcription and delay flowering to impart soybean adaptation to high latitudes. Three E1 homologues undergo subfunctionalisation and show differential subcellular localisation. Moreover, they all possess self-repression capability and each suppresses the two homologous counterparts. Subfunctionalisation and the transcriptional regulation of E1 genes collectively finetune flowering time and high-latitude adaptation in soybean. We propose a model for the functional fate of the three E1 genes after the soybean whole-genome duplication events, refine the molecular mechanisms underlying high-latitude adaption, and provide a potential molecular-breeding resource.

References
1.
Li H, Durbin R . Fast and accurate short read alignment with Burrows-Wheeler transform. Bioinformatics. 2009; 25(14):1754-60. PMC: 2705234. DOI: 10.1093/bioinformatics/btp324. View

2.
Graham P, Vance C . Legumes: importance and constraints to greater use. Plant Physiol. 2003; 131(3):872-7. PMC: 1540286. DOI: 10.1104/pp.017004. View

3.
Lu S, Dong L, Fang C, Liu S, Kong L, Cheng Q . Stepwise selection on homeologous PRR genes controlling flowering and maturity during soybean domestication. Nat Genet. 2020; 52(4):428-436. DOI: 10.1038/s41588-020-0604-7. View

4.
Baute G, Kane N, Grassa C, Lai Z, Rieseberg L . Genome scans reveal candidate domestication and improvement genes in cultivated sunflower, as well as post-domestication introgression with wild relatives. New Phytol. 2015; 206(2):830-8. DOI: 10.1111/nph.13255. View

5.
Van de Peer Y, Mizrachi E, Marchal K . The evolutionary significance of polyploidy. Nat Rev Genet. 2017; 18(7):411-424. DOI: 10.1038/nrg.2017.26. View