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RNA Biogenesis and RNA Metabolism Factors As R-loop Suppressors: a Hidden Role in Genome Integrity

Overview
Journal Genes Dev
Specialty Molecular Biology
Date 2024 Jul 10
PMID 38986581
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Abstract

Genome integrity relies on the accuracy of DNA metabolism, but as appreciated for more than four decades, transcription enhances mutation and recombination frequencies. More recent research provided evidence for a previously unforeseen link between RNA and DNA metabolism, which is often related to the accumulation of DNA-RNA hybrids and R-loops. In addition to physiological roles, R-loops interfere with DNA replication and repair, providing a molecular scenario for the origin of genome instability. Here, we review current knowledge on the multiple RNA factors that prevent or resolve R-loops and consequent transcription-replication conflicts and thus act as modulators of genome dynamics.

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References
1.
Rawal C, Zardoni L, Di Terlizzi M, Galati E, Brambati A, Lazzaro F . Senataxin Ortholog Sen1 Limits DNA:RNA Hybrid Accumulation at DNA Double-Strand Breaks to Control End Resection and Repair Fidelity. Cell Rep. 2020; 31(5):107603. DOI: 10.1016/j.celrep.2020.107603. View

2.
Helmrich A, Ballarino M, Tora L . Collisions between replication and transcription complexes cause common fragile site instability at the longest human genes. Mol Cell. 2011; 44(6):966-77. DOI: 10.1016/j.molcel.2011.10.013. View

3.
Ginno P, Lott P, Christensen H, Korf I, Chedin F . R-loop formation is a distinctive characteristic of unmethylated human CpG island promoters. Mol Cell. 2012; 45(6):814-25. PMC: 3319272. DOI: 10.1016/j.molcel.2012.01.017. View

4.
Perez-Calero C, Bayona-Feliu A, Xue X, Barroso S, Munoz S, Gonzalez-Basallote V . UAP56/DDX39B is a major cotranscriptional RNA-DNA helicase that unwinds harmful R loops genome-wide. Genes Dev. 2020; 34(13-14):898-912. PMC: 7328515. DOI: 10.1101/gad.336024.119. View

5.
Stolz R, Sulthana S, Hartono S, Malig M, Benham C, Chedin F . Interplay between DNA sequence and negative superhelicity drives R-loop structures. Proc Natl Acad Sci U S A. 2019; 116(13):6260-6269. PMC: 6442632. DOI: 10.1073/pnas.1819476116. View