» Articles » PMID: 3822804

Assignment of the 13C Nuclear Magnetic Resonance Spectrum of a Short DNA-duplex with 1H-detected Two-dimensional Heteronuclear Correlation Spectroscopy

Overview
Specialty Biochemistry
Date 1987 Jan 12
PMID 3822804
Citations 4
Authors
Affiliations
Soon will be listed here.
Abstract

Proton-detected 1H-13C heteronuclear correlated spectroscopy [( 1H,13C]-COSY) was used to establish relations between the carbon-13 and proton nuclear magnetic resonance chemical shifts in the hexadeoxynucleoside pentaphosphate d-(GCATGC)2. Using the previously established sequence-specific proton NMR assignments, sequence-specific assignments were thus obtained for nearly all proton-bearing carbons. This approach offers a new criterion for distinguishing between the proton NMR lines of purines and pyrimidines, based on the different proton-carbon-13 coupling constants. Furthermore, the adenine ring carbon 2 has a unique carbon-13 chemical shift, which enables a straightforward identification of the adenine C2H resonances by [1H,13C]-COSY.

Citing Articles

The role of SAXS and molecular simulations in 3D structure elucidation of a DNA aptamer against lung cancer.

Morozov D, Mironov V, Moryachkov R, Shchugoreva I, Artyushenko P, Zamay G Mol Ther Nucleic Acids. 2021; 25:316-327.

PMID: 34458013 PMC: 8379633. DOI: 10.1016/j.omtn.2021.07.015.


Solid-state NMR determination of sugar ring pucker in (13)C-labeled 2'-deoxynucleosides.

van Dam L, Ouwerkerk N, Brinkmann A, Raap J, Levitt M Biophys J. 2002; 83(5):2835-44.

PMID: 12414715 PMC: 1302367. DOI: 10.1016/S0006-3495(02)75292-2.


Hydrogen-bonding effects and 13C-NMR of the DNA double helix.

Borer P, LaPlante S, Zanatta N, Levy G Nucleic Acids Res. 1988; 16(5):2323-32.

PMID: 3357779 PMC: 338219. DOI: 10.1093/nar/16.5.2323.


Heteronuclear NMR of DNA with the heteronucleus in natural abundance: facilitated assignment and extraction of coupling constants.

Schmieder P, Ippel J, van den Elst H, van der Marel G, VAN Boom J, Altona C Nucleic Acids Res. 1992; 20(18):4747-51.

PMID: 1408787 PMC: 334227. DOI: 10.1093/nar/20.18.4747.

References
1.
Shindo H . 13C NMR study of conformation and mobility of 145-base-pair poly(dA-dT) . poly(dA-dT) in solution. Eur J Biochem. 1981; 120(2):309-12. DOI: 10.1111/j.1432-1033.1981.tb05705.x. View

2.
Lankhorst P, Erkelens C, Haasnoot C, Altona C . Carbon-13 NMR in conformational analysis of nucleic acid fragments. Heteronuclear chemical shift correlation spectroscopy of RNA constituents. Nucleic Acids Res. 1983; 11(20):7215-30. PMC: 326457. DOI: 10.1093/nar/11.20.7215. View

3.
Hare D, Wemmer D, Chou S, Drobny G, Reid B . Assignment of the non-exchangeable proton resonances of d(C-G-C-G-A-A-T-T-C-G-C-G) using two-dimensional nuclear magnetic resonance methods. J Mol Biol. 1983; 171(3):319-36. DOI: 10.1016/0022-2836(83)90096-7. View

4.
Feigon J, Leupin W, Denny W, Kearns D . Two-dimensional proton nuclear magnetic resonance investigation of the synthetic deoxyribonucleic acid decamer d(ATATCGATAT)2. Biochemistry. 1983; 22(25):5943-51. DOI: 10.1021/bi00294a038. View

5.
Borer P, Zanatta N, Holak T, Levy G, VAN Boom J, Wang A . Conformation and dynamics of short DNA duplexes: (dC-dG)3 and (dC-dG)4. J Biomol Struct Dyn. 1984; 1(6):1373-86. DOI: 10.1080/07391102.1984.10507526. View