» Articles » PMID: 37805633

A Comprehensive Dataset of Animal-associated Sarbecoviruses

Overview
Journal Sci Data
Specialty Science
Date 2023 Oct 7
PMID 37805633
Authors
Affiliations
Soon will be listed here.
Abstract

Zoonotic spillover of sarbecoviruses (SarbeCoVs) from non-human animals to humans under natural conditions has led to two large-scale pandemics, the severe acute respiratory syndrome (SARS) pandemic in 2003 and the ongoing COVID-19 pandemic. Knowledge of the genetic diversity, geographical distribution, and host specificity of SarbeCoVs is therefore of interest for pandemic surveillance and origin tracing of SARS-CoV and SARS-CoV-2. This study presents a comprehensive repository of publicly available animal-associated SarbeCoVs, covering 1,535 viruses identified from 63 animal species distributed in 43 countries worldwide (as of February 14,2023). Relevant meta-information, such as host species, sampling time and location, was manually curated and included in the dataset to facilitate further research on the potential patterns of viral diversity and ecological characteristics. In addition, the dataset also provides well-annotated sequence sets of receptor-binding domains (RBDs) and receptor-binding motifs (RBMs) for the scientific community to highlight the potential determinants of successful cross-species transmission that could be aid in risk estimation and strategic design for future emerging infectious disease control and prevention.

Citing Articles

Design, Immunogenicity and Preclinical Efficacy of the ChAdOx1.COVconsv12 Pan-Sarbecovirus T-Cell Vaccine.

Wee E, Kempster S, Ferguson D, Hall J, Ham C, Morris S Vaccines (Basel). 2024; 12(9).

PMID: 39339997 PMC: 11436245. DOI: 10.3390/vaccines12090965.


A comprehensive dataset of animal-associated sarbecoviruses.

Liu B, Zhao P, Xu P, Han Y, Wang Y, Chen L Sci Data. 2023; 10(1):681.

PMID: 37805633 PMC: 10560225. DOI: 10.1038/s41597-023-02558-5.

References
1.
Chidoti V, De Nys H, Pinarello V, Mashura G, Misse D, Guerrini L . Longitudinal Survey of Coronavirus Circulation and Diversity in Insectivorous Bat Colonies in Zimbabwe. Viruses. 2022; 14(4). PMC: 9031365. DOI: 10.3390/v14040781. View

2.
He B, Zhang Y, Xu L, Yang W, Yang F, Feng Y . Identification of diverse alphacoronaviruses and genomic characterization of a novel severe acute respiratory syndrome-like coronavirus from bats in China. J Virol. 2014; 88(12):7070-82. PMC: 4054348. DOI: 10.1128/JVI.00631-14. View

3.
Zhou P, Yang X, Wang X, Hu B, Zhang L, Zhang W . A pneumonia outbreak associated with a new coronavirus of probable bat origin. Nature. 2020; 579(7798):270-273. PMC: 7095418. DOI: 10.1038/s41586-020-2012-7. View

4.
Li P, Hu J, Liu Y, Ou X, Mu Z, Lu X . Effect of polymorphism in Rhinolophus affinis ACE2 on entry of SARS-CoV-2 related bat coronaviruses. PLoS Pathog. 2023; 19(1):e1011116. PMC: 9904459. DOI: 10.1371/journal.ppat.1011116. View

5.
Hamer S, Pauvolid-Correa A, Zecca I, Davila E, Auckland L, Roundy C . SARS-CoV-2 Infections and Viral Isolations among Serially Tested Cats and Dogs in Households with Infected Owners in Texas, USA. Viruses. 2021; 13(5). PMC: 8159091. DOI: 10.3390/v13050938. View