Investigating Pangenome Graphs Using Wheat Panache

Overview

Journal Methods Mol Biol

Specialty Molecular Biology

Date 2023 Aug 30

PMID 37646934

Authors

Philipp E Bayer

David Edwards

Affiliations

Soon will be listed here.

Abstract

Pangenome graphs quickly become the central data structure representing the diversity of variation we see across related genomes. Pangenome graphs have been published for some species, including plants of agronomic interest. However, visualizing these graphs is not easy as the graphs are large, and variants within these graphs are complex. Tools are needed to visualize graph data structures. Here, we present a workflow to search and visualize a wheat pangenome graph using Wheat Panache. The approach presented assists researchers interested in wheat genomics.

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