Gut Microbiota of Healthy Asians and Their Discriminative Features Revealed by Metagenomics Approach

Overview

Journal 3 Biotech

Publisher Springer

Specialty Biotechnology

Date 2023 Jul 17

PMID 37457869

Authors

Siti Fatimah Mohd Taha

Subha Bhassu

Hasmahzaiti Omar

Chandramati Samudi Raju

Arutchelvan Rajamanikam

Suresh Kumar P Govind

Saharuddin Bin Mohamad

Affiliations

Soon will be listed here.

Abstract

Supplementary Information: The online version contains supplementary material available at 10.1007/s13205-023-03671-3.

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References

Raethong N, Nakphaichit M, Suratannon N, Sathitkowitchai W, Weerapakorn W, Keawsompong S . Analysis of Human Gut Microbiome: Taxonomy and Metabolic Functions in Thai Adults. Genes (Basel). 2021; 12(3). PMC: 7996147. DOI: 10.3390/genes12030331. View

La-Ongkham O, Nakphaichit M, Nakayama J, Keawsompong S, Nitisinprasert S . Age-related changes in the gut microbiota and the core gut microbiome of healthy Thai humans. 3 Biotech. 2020; 10(6):276. PMC: 7261292. DOI: 10.1007/s13205-020-02265-7. View

Holmes E, Li J, Marchesi J, Nicholson J . Gut microbiota composition and activity in relation to host metabolic phenotype and disease risk. Cell Metab. 2012; 16(5):559-64. DOI: 10.1016/j.cmet.2012.10.007. View

Leeuwendaal N, Stanton C, OToole P, Beresford T . Fermented Foods, Health and the Gut Microbiome. Nutrients. 2022; 14(7). PMC: 9003261. DOI: 10.3390/nu14071527. View

Madison A, Kiecolt-Glaser J . Stress, depression, diet, and the gut microbiota: human-bacteria interactions at the core of psychoneuroimmunology and nutrition. Curr Opin Behav Sci. 2020; 28:105-110. PMC: 7213601. DOI: 10.1016/j.cobeha.2019.01.011. View

Bliss E, Whiteside E . The Gut-Brain Axis, the Human Gut Microbiota and Their Integration in the Development of Obesity. Front Physiol. 2018; 9:900. PMC: 6052131. DOI: 10.3389/fphys.2018.00900. View

Bhute S, Pande P, Shetty S, Shelar R, Mane S, Kumbhare S . Molecular Characterization and Meta-Analysis of Gut Microbial Communities Illustrate Enrichment of Prevotella and Megasphaera in Indian Subjects. Front Microbiol. 2016; 7:660. PMC: 4860526. DOI: 10.3389/fmicb.2016.00660. View

Huang T, Lai J, Du Y, Xu Y, Ruan L, Hu S . Current Understanding of Gut Microbiota in Mood Disorders: An Update of Human Studies. Front Genet. 2019; 10:98. PMC: 6389720. DOI: 10.3389/fgene.2019.00098. View

Kaur K, Khatri I, Akhtar A, Subramanian S, Ramya T . Metagenomics analysis reveals features unique to Indian distal gut microbiota. PLoS One. 2020; 15(4):e0231197. PMC: 7141701. DOI: 10.1371/journal.pone.0231197. View

10.

Candela M, Biagi E, Maccaferri S, Turroni S, Brigidi P . Intestinal microbiota is a plastic factor responding to environmental changes. Trends Microbiol. 2012; 20(8):385-91. DOI: 10.1016/j.tim.2012.05.003. View

11.

Stavropoulou E, Kantartzi K, Tsigalou C, Konstantinidis T, Romanidou G, Voidarou C . Focus on the Gut-Kidney Axis in Health and Disease. Front Med (Lausanne). 2021; 7:620102. PMC: 7859267. DOI: 10.3389/fmed.2020.620102. View

12.

Caspi R, Altman T, Billington R, Dreher K, Foerster H, Fulcher C . The MetaCyc database of metabolic pathways and enzymes and the BioCyc collection of Pathway/Genome Databases. Nucleic Acids Res. 2013; 42(Database issue):D459-71. PMC: 3964957. DOI: 10.1093/nar/gkt1103. View

13.

Miquel S, Martin R, Bridonneau C, Robert V, Sokol H, Bermudez-Humaran L . Ecology and metabolism of the beneficial intestinal commensal bacterium Faecalibacterium prausnitzii. Gut Microbes. 2014; 5(2):146-51. PMC: 4063839. DOI: 10.4161/gmic.27651. View

14.

Ruengsomwong S, La-Ongkham O, Jiang J, Wannissorn B, Nakayama J, Nitisinprasert S . Microbial Community of Healthy Thai Vegetarians and Non-Vegetarians, Their Core Gut Microbiota, and Pathogen Risk. J Microbiol Biotechnol. 2016; 26(10):1723-1735. DOI: 10.4014/jmb.1603.03057. View

15.

Bolte L, Vich Vila A, Imhann F, Collij V, Gacesa R, Peters V . Long-term dietary patterns are associated with pro-inflammatory and anti-inflammatory features of the gut microbiome. Gut. 2021; 70(7):1287-1298. PMC: 8223641. DOI: 10.1136/gutjnl-2020-322670. View

16.

Wirbel J, Pyl P, Kartal E, Zych K, Kashani A, Milanese A . Meta-analysis of fecal metagenomes reveals global microbial signatures that are specific for colorectal cancer. Nat Med. 2019; 25(4):679-689. PMC: 7984229. DOI: 10.1038/s41591-019-0406-6. View

17.

Suzek B, Huang H, McGarvey P, Mazumder R, Wu C . UniRef: comprehensive and non-redundant UniProt reference clusters. Bioinformatics. 2007; 23(10):1282-8. DOI: 10.1093/bioinformatics/btm098. View

18.

Laudadio I, Fulci V, Palone F, Stronati L, Cucchiara S, Carissimi C . Quantitative Assessment of Shotgun Metagenomics and 16S rDNA Amplicon Sequencing in the Study of Human Gut Microbiome. OMICS. 2018; 22(4):248-254. DOI: 10.1089/omi.2018.0013. View

19.

Ma Q, Xing C, Long W, Wang H, Liu Q, Wang R . Impact of microbiota on central nervous system and neurological diseases: the gut-brain axis. J Neuroinflammation. 2019; 16(1):53. PMC: 6397457. DOI: 10.1186/s12974-019-1434-3. View

20.

Beghini F, McIver L, Blanco-Miguez A, Dubois L, Asnicar F, Maharjan S . Integrating taxonomic, functional, and strain-level profiling of diverse microbial communities with bioBakery 3. Elife. 2021; 10. PMC: 8096432. DOI: 10.7554/eLife.65088. View