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Prediction of Linear B Cell Epitopes in Proteins

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Specialty Molecular Biology
Date 2023 May 31
PMID 37258915
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Abstract

The accurate prediction of B cell epitopes is crucial for the design and development of vaccines, especially of those preventive for emerging pathogenic diseases. Preventive vaccines are mainly based on the induction of highly specific neutralizing antibodies. This chapter deals with some prediction methods, which are currently available as user-friendly online servers, to predict B cell epitopes in proteins. A final assessment to validate these predictions is done by recurring to the Immune Epitope Database (IEDB).

References
1.
Zierep P, Vita R, Blazeska N, Moumbock A, Greenbaum J, Peters B . Towards the prediction of non-peptidic epitopes. PLoS Comput Biol. 2022; 18(2):e1009151. PMC: 8893639. DOI: 10.1371/journal.pcbi.1009151. View

2.
Jameson B, Wolf H . The antigenic index: a novel algorithm for predicting antigenic determinants. Comput Appl Biosci. 1988; 4(1):181-6. DOI: 10.1093/bioinformatics/4.1.181. View

3.
Vita R, Mahajan S, Overton J, Dhanda S, Martini S, Cantrell J . The Immune Epitope Database (IEDB): 2018 update. Nucleic Acids Res. 2018; 47(D1):D339-D343. PMC: 6324067. DOI: 10.1093/nar/gky1006. View

4.
Sun P, Guo S, Sun J, Tan L, Lu C, Ma Z . Advances in In-silico B-cell Epitope Prediction. Curr Top Med Chem. 2018; 19(2):105-115. DOI: 10.2174/1568026619666181130111827. View

5.
Ashford J, Reis-Cunha J, Lobo I, Lobo F, Campelo F . Organism-specific training improves performance of linear B-cell epitope prediction. Bioinformatics. 2021; 37(24):4826-4834. PMC: 8665745. DOI: 10.1093/bioinformatics/btab536. View