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Heterochromatin Organization and Phase Separation

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Journal Nucleus
Date 2023 Jan 30
PMID 36710442
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Abstract

The eukaryotic nucleus displays a variety of membraneless compartments with distinct biomolecular composition and specific cellular activities. Emerging evidence indicates that protein-based liquid-liquid phase separation (LLPS) plays an essential role in the formation and dynamic regulation of heterochromatin compartmentalization. This feature is especially conspicuous at the pericentric heterochromatin domains. In this review, we will describe our understanding of heterochromatin organization and LLPS. In addition, we will highlight the increasing importance of multivalent weak homo- and heteromolecular interactions in LLPS-mediated heterochromatin compartmentalization in the complex environment inside living cells.

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References
1.
Lucking C, Brice A . Alpha-synuclein and Parkinson's disease. Cell Mol Life Sci. 2001; 57(13-14):1894-908. PMC: 11146993. DOI: 10.1007/PL00000671. View

2.
Strom A, Emelyanov A, Mir M, Fyodorov D, Darzacq X, Karpen G . Phase separation drives heterochromatin domain formation. Nature. 2017; 547(7662):241-245. PMC: 6022742. DOI: 10.1038/nature22989. View

3.
Habchi J, Tompa P, Longhi S, Uversky V . Introducing protein intrinsic disorder. Chem Rev. 2014; 114(13):6561-88. DOI: 10.1021/cr400514h. View

4.
Keenen M, Brown D, Brennan L, Renger R, Khoo H, Carlson C . HP1 proteins compact DNA into mechanically and positionally stable phase separated domains. Elife. 2021; 10. PMC: 7932698. DOI: 10.7554/eLife.64563. View

5.
Li P, Banjade S, Cheng H, Kim S, Chen B, Guo L . Phase transitions in the assembly of multivalent signalling proteins. Nature. 2012; 483(7389):336-40. PMC: 3343696. DOI: 10.1038/nature10879. View