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Custom-made Design of Metabolite Composition in N. Benthamiana Leaves Using CRISPR Activators

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Specialties Biology
Biotechnology
Date 2022 May 6
PMID 35514036
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Abstract

Transcriptional regulators based on CRISPR architecture expand our ability to reprogramme endogenous gene expression in plants. One of their potential applications is the customization of plant metabolome through the activation of selected enzymes in a given metabolic pathway. Using the previously described multiplexable CRISPR activator dCasEV2.1, we assayed the selective enrichment in Nicotiana benthamiana leaves of four different flavonoids, namely, naringenin, eriodictyol, kaempferol, and quercetin. After careful selection of target genes and guide RNAs combinations, we created successful activation programmes for each of the four metabolites, each programme activating between three and seven genes, and with individual gene activation levels ranging from 4- to 1500-fold. Metabolic analysis of the flavonoid profiles of each multigene activation programme showed a sharp and selective enrichment of the intended metabolites and their glycosylated derivatives. Remarkably, principal component analysis of untargeted metabolic profiles clearly separated samples according to their activation treatment, and hierarchical clustering separated the samples into five groups, corresponding to the expected four highly enriched metabolite groups, plus an un-activated control. These results demonstrate that dCasEV2.1 is a powerful tool for re-routing metabolic fluxes towards the accumulation of metabolites of interest, opening the door for the custom-made design of metabolic contents in plants.

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References
1.
Jisha V, Dampanaboina L, Vadassery J, Mithofer A, Kappara S, Ramanan R . Overexpression of an AP2/ERF Type Transcription Factor OsEREBP1 Confers Biotic and Abiotic Stress Tolerance in Rice. PLoS One. 2015; 10(6):e0127831. PMC: 4452794. DOI: 10.1371/journal.pone.0127831. View

2.
Zalatan J, Lee M, Almeida R, Gilbert L, Whitehead E, La Russa M . Engineering complex synthetic transcriptional programs with CRISPR RNA scaffolds. Cell. 2014; 160(1-2):339-50. PMC: 4297522. DOI: 10.1016/j.cell.2014.11.052. View

3.
Godwin I, Rutkoski J, Varshney R, Hickey L . Technological perspectives for plant breeding. Theor Appl Genet. 2019; 132(3):555-557. DOI: 10.1007/s00122-019-03321-4. View

4.
Tiwari S, Belachew A, Ma S, Young M, Ade J, Shen Y . The EDLL motif: a potent plant transcriptional activation domain from AP2/ERF transcription factors. Plant J. 2012; 70(5):855-65. DOI: 10.1111/j.1365-313X.2012.04935.x. View

5.
Selma S, Sanmartin N, Espinosa-Ruiz A, Gianoglio S, Lopez-Gresa M, Vazquez-Vilar M . Custom-made design of metabolite composition in N. benthamiana leaves using CRISPR activators. Plant Biotechnol J. 2022; 20(8):1578-1590. PMC: 9342607. DOI: 10.1111/pbi.13834. View