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Oxygen-Sensitive Metalloprotein Structure Determination by Cryo-Electron Microscopy

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Journal Biomolecules
Publisher MDPI
Date 2022 Mar 25
PMID 35327633
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Abstract

Metalloproteins are involved in key cell processes such as photosynthesis, respiration, and oxygen transport. However, the presence of transition metals (notably iron as a component of [Fe-S] clusters) often makes these proteins sensitive to oxygen-induced degradation. Consequently, their study usually requires strict anaerobic conditions. Although X-ray crystallography has been the method of choice for solving macromolecular structures for many years, recently electron microscopy has also become an increasingly powerful structure-solving technique. We have used our previous experience with cryo-crystallography to develop a method to prepare cryo-EM grids in an anaerobic chamber and have applied it to solve the structures of apoferritin and the 3 [FeS]-containing pyruvate ferredoxin oxidoreductase (PFOR) at 2.40 Å and 2.90 Å resolution, respectively. The maps are of similar quality to the ones obtained under air, thereby validating our method as an improvement in the structural investigation of oxygen-sensitive metalloproteins by cryo-EM.

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References
1.
Senda M, Senda T . Anaerobic crystallization of proteins. Biophys Rev. 2017; 10(2):183-189. PMC: 5899705. DOI: 10.1007/s12551-017-0345-8. View

2.
Dobbek H, Svetlitchnyi V, Gremer L, Huber R, Meyer O . Crystal structure of a carbon monoxide dehydrogenase reveals a [Ni-4Fe-5S] cluster. Science. 2001; 293(5533):1281-5. DOI: 10.1126/science.1061500. View

3.
Chen P, Aman H, Can M, Ragsdale S, Drennan C . Binding site for coenzyme A revealed in the structure of pyruvate:ferredoxin oxidoreductase from . Proc Natl Acad Sci U S A. 2018; 115(15):3846-3851. PMC: 5899475. DOI: 10.1073/pnas.1722329115. View

4.
Zivanov J, Nakane T, Forsberg B, Kimanius D, Hagen W, Lindahl E . New tools for automated high-resolution cryo-EM structure determination in RELION-3. Elife. 2018; 7. PMC: 6250425. DOI: 10.7554/eLife.42166. View

5.
BEINERT H, Holm R, Munck E . Iron-sulfur clusters: nature's modular, multipurpose structures. Science. 1997; 277(5326):653-9. DOI: 10.1126/science.277.5326.653. View