» Articles » PMID: 33693457

Deep Learning in Bioinformatics and Biomedicine

Overview
Journal Brief Bioinform
Specialty Biology
Date 2021 Mar 11
PMID 33693457
Citations 15
Authors
Affiliations
Soon will be listed here.
Citing Articles

CT radiomics-based biomarkers can predict response to immunotherapy in hepatocellular carcinoma.

Qi L, Zhu Y, Li J, Zhou M, Liu B, Chen J Sci Rep. 2024; 14(1):20027.

PMID: 39198563 PMC: 11358293. DOI: 10.1038/s41598-024-70208-w.


DeepSS2GO: protein function prediction from secondary structure.

Song F, Su J, Huang S, Zhang N, Li K, Ni M Brief Bioinform. 2024; 25(3).

PMID: 38701416 PMC: 11066904. DOI: 10.1093/bib/bbae196.


Improving prediction of maternal health risks using PCA features and TreeNet model.

Jamel L, Umer M, Saidani O, Alabduallah B, Alsubai S, Ishmanov F PeerJ Comput Sci. 2024; 10:e1982.

PMID: 38660162 PMC: 11042025. DOI: 10.7717/peerj-cs.1982.


Human exons and introns classification using pre-trained Resnet-50 and GoogleNet models and 13-layers CNN model.

Ben Nasr Barber F, Elloumi Oueslati A J Genet Eng Biotechnol. 2024; 22(1):100359.

PMID: 38494268 PMC: 10903757. DOI: 10.1016/j.jgeb.2024.100359.


i5mC-DCGA: an improved hybrid network framework based on the CBAM attention mechanism for identifying promoter 5mC sites.

Jia J, Lei R, Qin L, Wei X BMC Genomics. 2024; 25(1):242.

PMID: 38443802 PMC: 10913688. DOI: 10.1186/s12864-024-10154-z.


References
1.
Stephens Z, Lee S, Faghri F, Campbell R, Zhai C, Efron M . Big Data: Astronomical or Genomical?. PLoS Biol. 2015; 13(7):e1002195. PMC: 4494865. DOI: 10.1371/journal.pbio.1002195. View

2.
Rudin C . Stop Explaining Black Box Machine Learning Models for High Stakes Decisions and Use Interpretable Models Instead. Nat Mach Intell. 2022; 1(5):206-215. PMC: 9122117. DOI: 10.1038/s42256-019-0048-x. View

3.
LeCun Y, Bengio Y, Hinton G . Deep learning. Nature. 2015; 521(7553):436-44. DOI: 10.1038/nature14539. View

4.
Ching T, Himmelstein D, Beaulieu-Jones B, Kalinin A, Do B, Way G . Opportunities and obstacles for deep learning in biology and medicine. J R Soc Interface. 2018; 15(141). PMC: 5938574. DOI: 10.1098/rsif.2017.0387. View

5.
Holzinger A, Langs G, Denk H, Zatloukal K, Muller H . Causability and explainability of artificial intelligence in medicine. Wiley Interdiscip Rev Data Min Knowl Discov. 2020; 9(4):e1312. PMC: 7017860. DOI: 10.1002/widm.1312. View