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Revealing the Hidden Sensitivity of Intrinsically Disordered Proteins to Their Chemical Environment

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Specialty Chemistry
Date 2020 Nov 16
PMID 33191750
Citations 37
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Abstract

Intrinsically disordered protein-regions (IDRs) make up roughly 30% of the human proteome and are central to a wide range of biological processes. Given a lack of persistent tertiary structure, all residues in IDRs are, to some extent, solvent exposed. This extensive surface area, coupled with the absence of strong intramolecular contacts, makes IDRs inherently sensitive to their chemical environment. We report a combined experimental, computational, and analytical framework for high-throughput characterization of IDR sensitivity. Our framework reveals that IDRs can expand or compact in response to changes in their solution environment. Importantly, the direction and magnitude of conformational change depend on both protein sequence and cosolute identity. For example, some solutes such as short polyethylene glycol chains exert an expanding effect on some IDRs and a compacting effect on others. Despite this complex behavior, we can rationally interpret IDR responsiveness to solution composition changes using relatively simple polymer models. Our results imply that solution-responsive IDRs are ubiquitous and can provide an additional layer of regulation to biological systems.

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References
1.
Ferreon A, Ferreon J, Wright P, Deniz A . Modulation of allostery by protein intrinsic disorder. Nature. 2013; 498(7454):390-4. PMC: 3718496. DOI: 10.1038/nature12294. View

2.
Sorensen C, Kjaergaard M . Effective concentrations enforced by intrinsically disordered linkers are governed by polymer physics. Proc Natl Acad Sci U S A. 2019; 116(46):23124-23131. PMC: 6859346. DOI: 10.1073/pnas.1904813116. View

3.
Mansouri A, Grese L, Rowe E, Pino J, Chennubhotla S, Ramanathan A . Folding propensity of intrinsically disordered proteins by osmotic stress. Mol Biosyst. 2016; 12(12):3695-3701. PMC: 5363718. DOI: 10.1039/c6mb00512h. View

4.
Martin E, Holehouse A, Peran I, Farag M, Incicco J, Bremer A . Valence and patterning of aromatic residues determine the phase behavior of prion-like domains. Science. 2020; 367(6478):694-699. PMC: 7297187. DOI: 10.1126/science.aaw8653. View

5.
Riback J, Bowman M, Zmyslowski A, Knoverek C, Jumper J, Hinshaw J . Innovative scattering analysis shows that hydrophobic disordered proteins are expanded in water. Science. 2017; 358(6360):238-241. PMC: 5959285. DOI: 10.1126/science.aan5774. View