» Articles » PMID: 3308843

Changes in the Linking Number of Supercoiled DNA Accompany Growth Transitions in Escherichia Coli

Overview
Journal J Bacteriol
Specialty Microbiology
Date 1987 Oct 1
PMID 3308843
Citations 99
Authors
Affiliations
Soon will be listed here.
Abstract

The supercoiling levels of plasmid DNA were determined from Escherichia coli which was grown in ways that are known to alter global patterns of gene expression and metabolism. Changes in DNA supercoiling were shown to occur during several types of these nutrient upshifts and downshifts. The most dramatic change in supercoiling was seen in starved cells, in which two populations of differentially relaxed plasmids were shown to coexist. Thus, some changes in the external nutritional environment that cause the cells to reorganize their global metabolism also cause accompanying changes in DNA supercoiling. Results of experiments with dinitrophenol suggested that the observed relaxations were probably not due to reduced pools of ATP. When rifampin was used to release supercoils restrained by RNA polymerase, the cellular topoisomerases responded by removing these new, unrestrained supercoils. We interpret these results as implying that the cellular topological machinery maintains a constant superhelical energy in the DNA except during certain growth transitions, when changes in metabolism and gene expression are accompanied by changes in DNA supercoiling.

Citing Articles

An integrated proteo-transcriptomics approach reveals novel drug targets against multidrug resistant .

Aswal M, Singh N, Singhal N, Kumar M Front Microbiol. 2025; 16:1531739.

PMID: 40071204 PMC: 11893563. DOI: 10.3389/fmicb.2025.1531739.


Stochastic nature and physiological implications of 5'-NAD RNA cap in bacteria.

Wiedermannova J, Babu R, Yuzenkova Y Nucleic Acids Res. 2024; 52(19):11838-11852.

PMID: 39325642 PMC: 11514452. DOI: 10.1093/nar/gkae813.


The role of replication-induced chromosomal copy numbers in spatio-temporal gene regulation and evolutionary chromosome plasticity.

Teufel M, Henkel W, Sobetzko P Front Microbiol. 2023; 14:1119878.

PMID: 37152747 PMC: 10157177. DOI: 10.3389/fmicb.2023.1119878.


Spatiotemporal Coupling of DNA Supercoiling and Genomic Sequence Organization-A Timing Chain for the Bacterial Growth Cycle?.

Muskhelishvili G, Sobetzko P, Travers A Biomolecules. 2022; 12(6).

PMID: 35740956 PMC: 9221221. DOI: 10.3390/biom12060831.


Relationship between the Chromosome Structural Dynamics and Gene Expression-A Chicken and Egg Dilemma?.

Le Berre D, Reverchon S, Muskhelishvili G, Nasser W Microorganisms. 2022; 10(5).

PMID: 35630292 PMC: 9144111. DOI: 10.3390/microorganisms10050846.


References
1.
Dresden M, HOAGLAND M . Polyribosomes of Escherichia coli. Breakdown during glucose starvation. J Biol Chem. 1967; 242(5):1065-8. View

2.
Borowiec J, Gralla J . All three elements of the lac ps promoter mediate its transcriptional response to DNA supercoiling. J Mol Biol. 1987; 195(1):89-97. DOI: 10.1016/0022-2836(87)90329-9. View

3.
Wang J . Interaction between DNA and an Escherichia coli protein omega. J Mol Biol. 1971; 55(3):523-33. DOI: 10.1016/0022-2836(71)90334-2. View

4.
Nath K, Koch A . Protein degradation in Escherichia coli. II. Strain differences in the degradation of protein and nucleic acid resulting from starvation. J Biol Chem. 1971; 246(22):6956-67. View

5.
LOWRY O, Carter J, Ward J, Glaser L . The effect of carbon and nitrogen sources on the level of metabolic intermediates in Escherichia coli. J Biol Chem. 1971; 246(21):6511-21. View