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Functional and Structural Insights into a Novel Promiscuous Ketoreductase of the Lugdunomycin Biosynthetic Pathway

Overview
Journal ACS Chem Biol
Specialties Biochemistry
Biology
Date 2020 Aug 26
PMID 32840360
Citations 5
Authors
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Abstract

Angucyclines are a structurally diverse class of actinobacterial natural products defined by their varied polycyclic ring systems, which display a wide range of biological activities. We recently discovered lugdunomycin (), a highly rearranged polyketide antibiotic derived from the angucycline backbone that is synthesized via several yet unexplained enzymatic reactions. Here, we show via , , and structural analysis that the promiscuous reductase LugOII catalyzes both a C6 and an unprecedented C1 ketoreduction. This then sets the stage for the subsequent C-ring cleavage that is key to the rearranged scaffolds of . The 1.1 Å structures of LugOII in complex with either ligand 8--Methylrabelomycin () or 8--Methyltetrangomycin () and of apoenzyme were resolved, which revealed a canonical Rossman fold and a remarkable conformational change during substrate capture and release. Mutational analysis uncovered key residues for substrate access, position, and catalysis as well as specific determinants that control its dual functionality. The insights obtained in this work hold promise for the discovery and engineering of other promiscuous reductases that may be harnessed for the generation of novel biocatalysts for chemoenzymatic applications.

Citing Articles

Divergence of Classical and C-Ring-Cleaved Angucyclines: Elucidation of Early Tailoring Steps in Lugdunomycin and Thioangucycline Biosynthesis.

Nuutila A, Xiao X, van der Heul H, van Wezel G, Dinis P, Elsayed S ACS Chem Biol. 2024; 19(5):1131-1141.

PMID: 38668630 PMC: 11106748. DOI: 10.1021/acschembio.4c00082.


Unravelling key enzymatic steps in C-ring cleavage during angucycline biosynthesis.

Elsayed S, van der Heul H, Xiao X, Nuutila A, Baars L, Wu C Commun Chem. 2023; 6(1):281.

PMID: 38110491 PMC: 10728087. DOI: 10.1038/s42004-023-01059-1.


Total Synthesis and Structure Assignment of the Relacidine Lipopeptide Antibiotics and Preparation of Analogues with Enhanced Stability.

Al Ayed K, Zamarbide Losada D, Machushynets N, Terlouw B, Elsayed S, Schill J ACS Infect Dis. 2023; 9(4):739-748.

PMID: 37000899 PMC: 10111413. DOI: 10.1021/acsinfecdis.3c00043.


Characterization of the Biosynthetic Gene Cluster and Shunt Products Yields Insights into the Biosynthesis of Balmoralmycin.

Ma G, Xin L, Liao Y, Chong Z, Candra H, Pang L Appl Environ Microbiol. 2022; 88(23):e0120822.

PMID: 36350133 PMC: 9746310. DOI: 10.1128/aem.01208-22.


Discovery of actinomycin L, a new member of the actinomycin family of antibiotics.

Machushynets N, Elsayed S, Du C, Siegler M, de la Cruz M, Genilloud O Sci Rep. 2022; 12(1):2813.

PMID: 35181725 PMC: 8857259. DOI: 10.1038/s41598-022-06736-0.

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