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Global Targeting of Functional Tyrosines Using Sulfur-triazole Exchange Chemistry

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Journal Nat Chem Biol
Date 2019 Nov 27
PMID 31768034
Citations 59
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Abstract

Covalent probes serve as valuable tools for global investigation of protein function and ligand binding capacity. Despite efforts to expand coverage of residues available for chemical proteomics (e.g., cysteine and lysine), a large fraction of the proteome remains inaccessible with current activity-based probes. Here, we introduce sulfur-triazole exchange (SuTEx) chemistry as a tunable platform for developing covalent probes with broad applications for chemical proteomics. We show modifications to the triazole leaving group can furnish sulfonyl probes with ~5-fold enhanced chemoselectivity for tyrosines over other nucleophilic amino acids to investigate more than 10,000 tyrosine sites in lysates and live cells. We discover that tyrosines with enhanced nucleophilicity are enriched in enzymatic, protein-protein interaction and nucleotide recognition domains. We apply SuTEx as a chemical phosphoproteomics strategy to monitor activation of phosphotyrosine sites. Collectively, we describe SuTEx as a biocompatible chemistry for chemical biology investigations of the human proteome.

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References
1.
Cravatt B, Wright A, Kozarich J . Activity-based protein profiling: from enzyme chemistry to proteomic chemistry. Annu Rev Biochem. 2008; 77:383-414. DOI: 10.1146/annurev.biochem.75.101304.124125. View

2.
Sadaghiani A, Verhelst S, Bogyo M . Tagging and detection strategies for activity-based proteomics. Curr Opin Chem Biol. 2006; 11(1):20-8. DOI: 10.1016/j.cbpa.2006.11.030. View

3.
Niphakis M, Cravatt B . Enzyme inhibitor discovery by activity-based protein profiling. Annu Rev Biochem. 2014; 83:341-77. DOI: 10.1146/annurev-biochem-060713-035708. View

4.
Deu E, Verdoes M, Bogyo M . New approaches for dissecting protease functions to improve probe development and drug discovery. Nat Struct Mol Biol. 2012; 19(1):9-16. PMC: 3513415. DOI: 10.1038/nsmb.2203. View

5.
Patricelli M, Szardenings A, Liyanage M, Nomanbhoy T, Wu M, Weissig H . Functional interrogation of the kinome using nucleotide acyl phosphates. Biochemistry. 2007; 46(2):350-8. DOI: 10.1021/bi062142x. View