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Engineering Allostery into Proteins

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Date 2019 Nov 11
PMID 31707711
Citations 8
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Abstract

Our ability to engineer protein structure and function has grown dramatically over recent years. Perhaps the next level in protein design is to develop proteins whose function can be regulated in response to various stimuli, including ligand binding, pH changes, and light. Endeavors toward these goals have tested and expanded on our understanding of protein function and allosteric regulation. In this chapter, we provide examples from different methods for developing new allosterically regulated proteins. These methods range from whole insertion of regulatory domains into new host proteins, to covalent attachment of photoswitches to generate light-responsive proteins, and to targeted changes to specific amino acid residues, especially to residues identified to be important for relaying allosteric information across the protein framework. Many of the examples we discuss have already found practical use in medical and biotechnology applications.

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References
1.
Motta-Mena L, Reade A, Mallory M, Glantz S, Weiner O, Lynch K . An optogenetic gene expression system with rapid activation and deactivation kinetics. Nat Chem Biol. 2014; 10(3):196-202. PMC: 3944926. DOI: 10.1038/nchembio.1430. View

2.
Cui D, Beaumont V, Ginther P, Lipchock J, Loria J . Leveraging Reciprocity to Identify and Characterize Unknown Allosteric Sites in Protein Tyrosine Phosphatases. J Mol Biol. 2017; 429(15):2360-2372. PMC: 5549688. DOI: 10.1016/j.jmb.2017.06.009. View

3.
Xu J, Sarma A, Wei Y, Beamer L, Van Doren S . Multiple Ligand-Bound States of a Phosphohexomutase Revealed by Principal Component Analysis of NMR Peak Shifts. Sci Rep. 2017; 7(1):5343. PMC: 5509744. DOI: 10.1038/s41598-017-05557-w. View

4.
Spiltoir J, Strickland D, Glotzer M, Tucker C . Optical Control of Peroxisomal Trafficking. ACS Synth Biol. 2015; 5(7):554-60. PMC: 4853267. DOI: 10.1021/acssynbio.5b00144. View

5.
Niks D, Hilario E, Dierkers A, Ngo H, Borchardt D, Neubauer T . Allostery and substrate channeling in the tryptophan synthase bienzyme complex: evidence for two subunit conformations and four quaternary states. Biochemistry. 2013; 52(37):6396-411. PMC: 4254854. DOI: 10.1021/bi400795e. View