Microbial Metagenomes and Metatranscriptomes During a Coastal Phytoplankton Bloom

Overview

Journal Sci Data

Specialty Science

Date 2019 Jul 24

PMID 31332186

Citations 23

Authors

Brent Nowinski

Christa B Smith

Courtney M Thomas

Kaitlin Esson

Roman Marin 3rd

Christina M Preston

James M Birch

Christopher A Scholin

Marcel Huntemann

Alicia Clum

Brian Foster

Bryce Foster

Simon Roux

Krishnaveni Palaniappan

Neha Varghese

Supratim Mukherjee

T B K Reddy

Chris Daum

Alex Copeland

I-Min A Chen

Natalia N Ivanova

Nikos C Kyrpides

Tijana Glavina Del Rio

William B Whitman

Ronald P Kiene

Emiley A Eloe-Fadrosh

Mary Ann Moran

Affiliations

Soon will be listed here.

Abstract

Metagenomic and metatranscriptomic time-series data covering a 52-day period in the fall of 2016 provide an inventory of bacterial and archaeal community genes, transcripts, and taxonomy during an intense dinoflagellate bloom in Monterey Bay, CA, USA. The dataset comprises 84 metagenomes (0.8 terabases), 82 metatranscriptomes (1.1 terabases), and 88 16S rRNA amplicon libraries from samples collected on 41 dates. The dataset also includes 88 18S rRNA amplicon libraries, characterizing the taxonomy of the eukaryotic community during the bloom. Accompanying the sequence data are chemical and biological measurements associated with each sample. These datasets will facilitate studies of the structure and function of marine bacterial communities during episodic phytoplankton blooms.

Citing Articles

Microbial Metagenomes Across a Complete Phytoplankton Bloom Cycle: High-Resolution Sampling Every 4 Hours Over 22 Days.

Nunn B, Timmins-Schiffman E, Mudge M, Plubell D, Chebli G, Kubanek J Sci Data. 2024; 11(1):1270.

PMID: 39578464 PMC: 11584781. DOI: 10.1038/s41597-024-04013-5.

Microbial Metagenomes Across a Complete Phytoplankton Bloom Cycle: High-Resolution Sampling Every 4 Hours Over 22 Days.

Nunn B, Timmins-Schiffman E, Mudge M, Plubell D, Chebli G, Kubanek J bioRxiv. 2024; .

PMID: 39386737 PMC: 11463347. DOI: 10.1101/2024.09.27.614549.

Taxonomic difference in marine bloom-forming phytoplanktonic species affects the dynamics of both bloom-responding prokaryotes and prokaryotic viruses.

Takebe H, Tominaga K, Isozaki T, Watanabe T, Yamamoto K, Kamikawa R mSystems. 2024; 9(4):e0094923.

PMID: 38441030 PMC: 11019789. DOI: 10.1128/msystems.00949-23.

Distinctive microbial community and genome structure in coastal seawater from a human-made port and nearby offshore island in northern Taiwan facing the Northwestern Pacific Ocean.

Shih C, Chen S, Hsu C, Chin C, Chiu W, Chang M PLoS One. 2023; 18(6):e0284022.

PMID: 37294811 PMC: 10256201. DOI: 10.1371/journal.pone.0284022.

Mutation-induced infections of phage-plasmids.

Shan X, Szabo R, Cordero O Nat Commun. 2023; 14(1):2049.

PMID: 37041135 PMC: 10090143. DOI: 10.1038/s41467-023-37512-x.

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