Neha Varghese
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Explore the profile of Neha Varghese including associated specialties, affiliations and a list of published articles.
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69
Citations
2378
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Recent Articles
1.
Oliver T, Varghese N, Roux S, Schulz F, Huntemann M, Clum A, et al.
Sci Data
. 2024 Sep;
11(1):966.
PMID: 39231974
The North Temperate Lakes Long-Term Ecological Research (NTL-LTER) program has been extensively used to improve understanding of how aquatic ecosystems respond to environmental stressors, climate fluctuations, and human activities. Here,...
2.
Nguyen T, Pombubpa N, Huntemann M, Clum A, Foster B, Foster B, et al.
Microbiol Resour Announc
. 2024 Feb;
13(3):e0098023.
PMID: 38329355
We present six whole community shotgun metagenomic sequencing data sets of two types of biological soil crusts sampled at the ecotone of the Mojave Desert and Colorado Desert in California....
3.
Nguyen T, Pombubpa N, Huntemann M, Clum A, Foster B, Foster B, et al.
Microbiol Resour Announc
. 2024 Jan;
13(2):e0108023.
PMID: 38189307
We present eight metatranscriptomic datasets of light algal and cyanolichen biological soil crusts from the Mojave Desert in response to wetting. These data will help us understand gene expression patterns...
4.
Vyshenska D, Sampara P, Singh K, Tomatsu A, Kauffman W, Nuccio E, et al.
mSystems
. 2023 Jun;
8(4):e0128022.
PMID: 37377419
Stable isotope probing (SIP) facilitates culture-independent identification of active microbial populations within complex ecosystems through isotopic enrichment of nucleic acids. Many DNA-SIP studies rely on 16S rRNA gene sequences to...
5.
Klonowska A, Ardley J, Moulin L, Zandberg J, Patrel D, Gollagher M, et al.
Front Microbiol
. 2023 Mar;
14:1082107.
PMID: 36925474
Integrated virus genomes (prophages) are commonly found in sequenced bacterial genomes but have rarely been described in detail for rhizobial genomes. STM 6018 is a rhizobial strain that was isolated...
6.
Duncan A, Barry K, Daum C, Eloe-Fadrosh E, Roux S, Schmidt K, et al.
Data Brief
. 2023 Mar;
47:108990.
PMID: 36879606
This article presents metagenome-assembled genomes (MAGs) for both eukaryotic and prokaryotic organisms originating from the Arctic and Atlantic oceans, along with gene prediction and functional annotation for MAGs from both...
7.
Mock T, Boulton W, Balmonte J, Barry K, Bertilsson S, Bowman J, et al.
PLoS Biol
. 2022 Oct;
20(10):e3001835.
PMID: 36251644
Multiomics approaches need to be applied in the central Arctic Ocean to benchmark biodiversity change and to identify novel species and their genes. As part of MOSAiC, EcoOmics will therefore...
8.
Chaput G, Ford J, DeDiego L, Narayanan A, Tam W, Whalen M, et al.
Microbiol Spectr
. 2022 May;
10(3):e0234621.
PMID: 35579457
Novel bacterial isolates with the capabilities of lignin depolymerization, catabolism, or both, could be pertinent to lignocellulosic biofuel applications. In this study, we aimed to identify anaerobic bacteria that could...
9.
Duncan A, Barry K, Daum C, Eloe-Fadrosh E, Roux S, Schmidt K, et al.
Microbiome
. 2022 Apr;
10(1):67.
PMID: 35484634
Background: Phytoplankton communities significantly contribute to global biogeochemical cycles of elements and underpin marine food webs. Although their uncultured genomic diversity has been estimated by planetary-scale metagenome sequencing and subsequent...
10.
Martin K, Schmidt K, Toseland A, Boulton C, Barry K, Beszteri B, et al.
Nat Commun
. 2021 Sep;
12(1):5483.
PMID: 34531387
Eukaryotic phytoplankton are responsible for at least 20% of annual global carbon fixation. Their diversity and activity are shaped by interactions with prokaryotes as part of complex microbiomes. Although differences...