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Leaf Transcriptome Assembly of (Burseraceae) and Annotation of Terpene Biosynthetic Genes

Overview
Journal Genes (Basel)
Publisher MDPI
Date 2019 May 25
PMID 31121954
Citations 2
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Abstract

Plants in the Burseraceae are globally recognized for producing resins and essential oils with medicinal properties and have economic value. In addition, most of the aromatic and non-aromatic components of Burseraceae resins are derived from a variety of terpene and terpenoid chemicals. Although terpene genes have been identified in model plant crops (e.g., , ), very few genomic resources are available for non-model groups, including the highly diverse Burseraceae family. Here we report the assembly of a leaf transcriptome of , an aromatic tree that has a large distribution in Central America, describe the functional annotation of putative terpene biosynthetic genes and compare terpene biosynthetic genes found in with those identified in other Burseraceae taxa. The genomic resources of can be used to generate novel sequencing markers for population genetics and comparative phylogenetic studies, and to investigate the diversity and evolution of terpene genes in the Burseraceae.

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References
1.
Sass C, Iles W, Barrett C, Smith S, Specht C . Revisiting the Zingiberales: using multiplexed exon capture to resolve ancient and recent phylogenetic splits in a charismatic plant lineage. PeerJ. 2016; 4:e1584. PMC: 4727956. DOI: 10.7717/peerj.1584. View

2.
Zapata F, Fine P . Diversification of the monoterpene synthase gene family (TPSb) in Protium, a highly diverse genus of tropical trees. Mol Phylogenet Evol. 2013; 68(3):432-42. DOI: 10.1016/j.ympev.2013.04.024. View

3.
Bi K, Vanderpool D, Singhal S, Linderoth T, Moritz C, Good J . Transcriptome-based exon capture enables highly cost-effective comparative genomic data collection at moderate evolutionary scales. BMC Genomics. 2012; 13:403. PMC: 3472323. DOI: 10.1186/1471-2164-13-403. View

4.
Simao F, Waterhouse R, Ioannidis P, Kriventseva E, Zdobnov E . BUSCO: assessing genome assembly and annotation completeness with single-copy orthologs. Bioinformatics. 2015; 31(19):3210-2. DOI: 10.1093/bioinformatics/btv351. View

5.
Letunic I, Bork P . Interactive Tree Of Life (iTOL): an online tool for phylogenetic tree display and annotation. Bioinformatics. 2006; 23(1):127-8. DOI: 10.1093/bioinformatics/btl529. View