» Articles » PMID: 35889471

Transcriptome Analyses Revealed the Key Metabolic Genes and Transcription Factors Involved in Terpenoid Biosynthesis in Sacred Lotus

Overview
Journal Molecules
Publisher MDPI
Specialty Biology
Date 2022 Jul 27
PMID 35889471
Authors
Affiliations
Soon will be listed here.
Abstract

As the largest group of structurally diverse metabolites, terpenoids are versatile natural compounds that act as metabolism mediators, plant volatiles, and ecological communicators. However, few terpenoid compounds have been identified in plant parts of sacred lotus ( Gaertn.). To elucidate the molecular genetic basis of the terpene biosynthetic pathway, terpenes from different parts of the plant, including seeds (S), young leaves (YL), mature leaves (ML), white flowers (WF), yellow flowers (YF), and red flowers (RF), were identified by LC-MS/MS and the relative contents of the same terpenes in different parts were compared. The results indicate that all plant parts primarily consist of triterpenes, with only minor quantities of sesquiterpenes and diterpenes, and there were differences in the terpene content detected in different plant parts. To illustrate the biosynthesis of various terpenoids, RNA sequencing was performed to profile the transcriptomes of various plant parts, which generated a total of 126.95 GB clean data and assembled into 29,630 unigenes. Among these unigenes, 105 candidate unigenes are involved in the mevalonate (MVA) pathway, methyl-erythritol phosphate (MEP) pathway, terpenoid backbone biosynthesis pathway, and terpenoid synthases pathway. Moreover, the co-expression network between terpene synthase (TPS) and WRKY transcription factors provides new information for the terpene biosynthesis pathway.

Citing Articles

Methyl jasmonate induces the regulation of protostane triterpene biosynthesis by microRNAs in Alisma orientale.

Run W, Li T, Wang S, Xiao S, Wu Y, Gu W Protoplasma. 2025; .

PMID: 39776246 DOI: 10.1007/s00709-024-02029-7.


Unraveling the genomic secrets of Tritonibacter mobilis AK171: a plant growth-promoting bacterium isolated from Avicennia marina.

Alghamdi A, Parween S, Hirt H, Saad M BMC Genomics. 2024; 25(1):672.

PMID: 38969999 PMC: 11225332. DOI: 10.1186/s12864-024-10555-0.


Designing of future ornamental crops: a biotechnological driven perspective.

Partap M, Verma V, Thakur M, Bhargava B Hortic Res. 2023; 10(11):uhad192.

PMID: 38023473 PMC: 10681008. DOI: 10.1093/hr/uhad192.

References
1.
Takaya A, Zhang Y, Asawatreratanakul K, Wititsuwannakul D, Wititsuwannakul R, Takahashi S . Cloning, expression and characterization of a functional cDNA clone encoding geranylgeranyl diphosphate synthase of Hevea brasiliensis. Biochim Biophys Acta. 2003; 1625(2):214-20. DOI: 10.1016/s0167-4781(02)00602-4. View

2.
Chen S, Wu B, Fang J, Liu Y, Zhang H, Fang L . Analysis of flavonoids from lotus (Nelumbo nucifera) leaves using high performance liquid chromatography/photodiode array detector tandem electrospray ionization mass spectrometry and an extraction method optimized by orthogonal design. J Chromatogr A. 2012; 1227:145-53. DOI: 10.1016/j.chroma.2011.12.098. View

3.
Varet H, Brillet-Gueguen L, Coppee J, Dillies M . SARTools: A DESeq2- and EdgeR-Based R Pipeline for Comprehensive Differential Analysis of RNA-Seq Data. PLoS One. 2016; 11(6):e0157022. PMC: 4900645. DOI: 10.1371/journal.pone.0157022. View

4.
Patra B, Schluttenhofer C, Wu Y, Pattanaik S, Yuan L . Transcriptional regulation of secondary metabolite biosynthesis in plants. Biochim Biophys Acta. 2013; 1829(11):1236-47. DOI: 10.1016/j.bbagrm.2013.09.006. View

5.
Qiu F, Wang X, Zheng Y, Wang H, Liu X, Su X . Full-Length Transcriptome Sequencing and Different Chemotype Expression Profile Analysis of Genes Related to Monoterpenoid Biosynthesis in . Int J Mol Sci. 2019; 20(24). PMC: 6941020. DOI: 10.3390/ijms20246230. View