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An Oligonucleotide Synthesizer Based on a Microreactor Chip and an Inkjet Printer

Overview
Journal Sci Rep
Specialty Science
Date 2019 Mar 27
PMID 30911034
Citations 8
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Abstract

Synthetic oligonucleotides (oligos) are important tools in the fields of molecular biology and genetic engineering. For applications requiring a large number of oligos with high concentration, it is critical to perform high throughput oligo synthesis and achieve high yield of each oligo. This study reports a microreactor chip for oligo synthesis. By incorporating silica beads in the microreactors, the surface area of the solid substrate for oligo synthesis increases significantly in each microreactor. These beads are fixed in the microreactors to withstand the flushing step in oligo synthesis. Compared to conventional synthesis methods, this design is able to avoid protocols to hold the beads and integrate more microreactors on a chip. An inkjet printer is utilized to deliver chemical reagents in the microreactors. To evaluate the feasibility of oligo synthesis using this proof-of-concept synthesizer, an oligo with six nucleotide units is successfully synthesized.

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References
1.
Zeng Y, Harrison D . Self-assembled colloidal arrays as three-dimensional nanofluidic sieves for separation of biomolecules on microchips. Anal Chem. 2007; 79(6):2289-95. DOI: 10.1021/ac061931h. View

2.
Jin Z, Geissler D, Qiu X, Wegner K, Hildebrandt N . A Rapid, Amplification-Free, and Sensitive Diagnostic Assay for Single-Step Multiplexed Fluorescence Detection of MicroRNA. Angew Chem Int Ed Engl. 2015; 54(34):10024-9. DOI: 10.1002/anie.201504887. View

3.
Hughes R, Ellington A . Synthetic DNA Synthesis and Assembly: Putting the Synthetic in Synthetic Biology. Cold Spring Harb Perspect Biol. 2017; 9(1). PMC: 5204324. DOI: 10.1101/cshperspect.a023812. View

4.
Lausted C, Dahl T, Warren C, King K, Smith K, Johnson M . POSaM: a fast, flexible, open-source, inkjet oligonucleotide synthesizer and microarrayer. Genome Biol. 2004; 5(8):R58. PMC: 507883. DOI: 10.1186/gb-2004-5-8-r58. View

5.
Gach P, Iwai K, Kim P, Hillson N, Singh A . Droplet microfluidics for synthetic biology. Lab Chip. 2017; 17(20):3388-3400. DOI: 10.1039/c7lc00576h. View