Song B, Liu D, Dai W, McMyn N, Wang Q, Yang D
Nat Cell Biol. 2025; 27(3):493-504.
PMID: 40011559
PMC: 11906366.
DOI: 10.1038/s41556-025-01626-9.
Moore M, Wekhande S, Issner R, Collins A, Cruz A, Liu Y
Nat Commun. 2025; 16(1):1357.
PMID: 39905017
PMC: 11794626.
DOI: 10.1038/s41467-025-56144-x.
Wang Y, Armendariz D, Wang L, Zhao H, Xie S, Hon G
Genome Biol. 2025; 26(1):10.
PMID: 39825430
PMC: 11740497.
DOI: 10.1186/s13059-025-03474-0.
Agarwal V, Inoue F, Schubach M, Penzar D, Martin B, Dash P
Nature. 2025; 639(8054):411-420.
PMID: 39814889
PMC: 11903340.
DOI: 10.1038/s41586-024-08430-9.
Wang Y, Hon G
Front Genome Ed. 2024; 6:1481443.
PMID: 39544254
PMC: 11560456.
DOI: 10.3389/fgeed.2024.1481443.
Classifying the molecular functions of transcription factors beyond activation and repression.
Dong J, Guertin M
Genes Dev. 2024; 38(21-24):931-932.
PMID: 39505405
PMC: 11610930.
DOI: 10.1101/gad.352340.124.
A cell type-aware framework for nominating non-coding variants in Mendelian regulatory disorders.
Lee A, Ayers L, Kosicki M, Chan W, Fozo L, Pratt B
Nat Commun. 2024; 15(1):8268.
PMID: 39333082
PMC: 11436875.
DOI: 10.1038/s41467-024-52463-7.
Deciphering the impact of genomic variation on function.
Nature. 2024; 633(8028):47-57.
PMID: 39232149
DOI: 10.1038/s41586-024-07510-0.
CatLearning: highly accurate gene expression prediction from histone mark.
Lu W, Tang Y, Liu Y, Lin S, Shuai Q, Liang B
Brief Bioinform. 2024; 25(5).
PMID: 39073831
PMC: 11285185.
DOI: 10.1093/bib/bbae373.
A model for accurate quantification of CRISPR effects in pooled FACS screens.
Pimentel H, Freimer J, Arce M, Garrido C, Marson A, Pritchard J
bioRxiv. 2024; .
PMID: 38948774
PMC: 11213010.
DOI: 10.1101/2024.06.17.599448.
Generation and characterization of inducible KRAB-dCas9 iPSCs from primates for cross-species CRISPRi.
Edenhofer F, Termeg A, Ohnuki M, Jocher J, Kliesmete Z, Briem E
iScience. 2024; 27(6):110090.
PMID: 38947524
PMC: 11214527.
DOI: 10.1016/j.isci.2024.110090.
Single-cell sequencing: promises and challenges for human genetics.
Sreenivasan V, Henck J, Spielmann M
Med Genet. 2024; 34(4):261-273.
PMID: 38836091
PMC: 11006387.
DOI: 10.1515/medgen-2022-2156.
An integrative framework to prioritize genes in more than 500 loci associated with body mass index.
Hemerich D, Svenstrup V, Obrero V, Preuss M, Moscati A, Hirschhorn J
Am J Hum Genet. 2024; 111(6):1035-1046.
PMID: 38754426
PMC: 11179420.
DOI: 10.1016/j.ajhg.2024.04.016.
A cell type-aware framework for nominating non-coding variants in Mendelian regulatory disorders.
Lee A, Ayers L, Kosicki M, Chan W, Fozo L, Pratt B
medRxiv. 2024; .
PMID: 38234731
PMC: 10793524.
DOI: 10.1101/2023.12.22.23300468.
An encyclopedia of enhancer-gene regulatory interactions in the human genome.
Gschwind A, Mualim K, Karbalayghareh A, Sheth M, Dey K, Jagoda E
bioRxiv. 2023; .
PMID: 38014075
PMC: 10680627.
DOI: 10.1101/2023.11.09.563812.
Decoding Heterogenous Single-cell Perturbation Responses.
Song B, Liu D, Dai W, McMyn N, Wang Q, Yang D
bioRxiv. 2023; .
PMID: 37961332
PMC: 10635009.
DOI: 10.1101/2023.10.30.564796.
Applications of CRISPR-Cas9 for advancing precision medicine in oncology: from target discovery to disease modeling.
Ravichandran M, Maddalo D
Front Genet. 2023; 14:1273994.
PMID: 37908590
PMC: 10613999.
DOI: 10.3389/fgene.2023.1273994.
The Impact of Genomic Variation on Function (IGVF) Consortium.
ArXiv. 2023; .
PMID: 37547663
PMC: 10402186.
Technological Convergence: Highlighting the Power of CRISPR Single-Cell Perturbation Toolkit for Functional Interrogation of Enhancers.
Ghamsari R, Rosenbluh J, Menon A, Lovell N, Alinejad-Rokny H
Cancers (Basel). 2023; 15(14).
PMID: 37509229
PMC: 10377346.
DOI: 10.3390/cancers15143566.
Integrated single-cell chromatin and transcriptomic analyses of human scalp identify gene-regulatory programs and critical cell types for hair and skin diseases.
Ober-Reynolds B, Wang C, Ko J, Rios E, Aasi S, Davis M
Nat Genet. 2023; 55(8):1288-1300.
PMID: 37500727
PMC: 11190942.
DOI: 10.1038/s41588-023-01445-4.
