» Articles » PMID: 30659176

Differential Damage and Repair of DNA-adducts Induced by Anti-cancer Drug Cisplatin Across Mouse Organs

Overview
Journal Nat Commun
Specialty Biology
Date 2019 Jan 20
PMID 30659176
Citations 88
Authors
Affiliations
Soon will be listed here.
Abstract

The platinum-based drug cisplatin is a widely used first-line therapy for several cancers. Cisplatin interacts with DNA mainly in the form of Pt-d(GpG) di-adduct, which stalls cell proliferation and activates DNA damage response. Although cisplatin shows a broad spectrum of anticancer activity, its utility is limited due to acquired drug resistance and toxicity to non-targeted tissues. Here, by integrating genome-wide high-throughput Damage-seq, XR-seq, and RNA-seq approaches, along with publicly available epigenomic data, we systematically study the genome-wide profiles of cisplatin damage formation and excision repair in mouse kidney, liver, lung and spleen. We find different DNA damage and repair spectra across mouse organs, which are associated with tissue-specific transcriptomic and epigenomic profiles. The framework and the multi-omics data we present here constitute an unbiased foundation for understanding the mechanisms of cellular response to cisplatin. Our approach should be applicable for studying drug resistance and for tailoring cancer chemotherapy regimens.

Citing Articles

Deciphering key roles of B cells in prognostication and tailored therapeutic strategies for lung adenocarcinoma: a multi-omics and machine learning approach towards predictive, preventive, and personalized treatment strategies.

Zhang J, Hu D, Fang P, Qi M, Sun G EPMA J. 2025; 16(1):127-163.

PMID: 39991096 PMC: 11842682. DOI: 10.1007/s13167-024-00390-4.


Spatio-temporal transcriptomic analysis reveals distinct nephrotoxicity, DNA damage, and regeneration response after cisplatin.

Wijaya L, Kunnen S, Trairatphisan P, Fisher C, Crosby M, Schaefer K Cell Biol Toxicol. 2025; 41(1):49.

PMID: 39982567 PMC: 11845422. DOI: 10.1007/s10565-025-10003-z.


Single-nucleotide-resolution genomic maps of O6-methylguanine from the glioblastoma drug temozolomide.

Kubitschek J, Takhaveev V, Mingard C, Rochlitz M, Reinert P, Keller G Nucleic Acids Res. 2025; 53(2).

PMID: 39831306 PMC: 11744188. DOI: 10.1093/nar/gkae1320.


Development of a machine learning-based predictive model for transitional cell carcinoma of the renal pelvis in White Americans: a SEER-based study.

Liu Z, Ma H, Guo Z, Su S, He X Transl Androl Urol. 2025; 13(12):2681-2693.

PMID: 39816222 PMC: 11732296. DOI: 10.21037/tau-24-385.


The role of cisplatin in modulating the tumor immune microenvironment and its combination therapy strategies: a new approach to enhance anti-tumor efficacy.

Li G, Che X, Wang S, Liu D, Xie D, Jiang B Ann Med. 2025; 57(1):2447403.

PMID: 39757995 PMC: 11705547. DOI: 10.1080/07853890.2024.2447403.


References
1.
Li H, Durbin R . Fast and accurate short read alignment with Burrows-Wheeler transform. Bioinformatics. 2009; 25(14):1754-60. PMC: 2705234. DOI: 10.1093/bioinformatics/btp324. View

2.
Hu J, Adebali O, Adar S, Sancar A . Dynamic maps of UV damage formation and repair for the human genome. Proc Natl Acad Sci U S A. 2017; 114(26):6758-6763. PMC: 5495279. DOI: 10.1073/pnas.1706522114. View

3.
Sancar A . Mechanisms of DNA Repair by Photolyase and Excision Nuclease (Nobel Lecture). Angew Chem Int Ed Engl. 2016; 55(30):8502-27. DOI: 10.1002/anie.201601524. View

4.
Shu X, Xiong X, Song J, He C, Yi C . Base-Resolution Analysis of Cisplatin-DNA Adducts at the Genome Scale. Angew Chem Int Ed Engl. 2016; 55(46):14246-14249. PMC: 5131569. DOI: 10.1002/anie.201607380. View

5.
Liedert B, Pluim D, Schellens J, Thomale J . Adduct-specific monoclonal antibodies for the measurement of cisplatin-induced DNA lesions in individual cell nuclei. Nucleic Acids Res. 2006; 34(6):e47. PMC: 1420801. DOI: 10.1093/nar/gkl051. View