» Articles » PMID: 30362717

Spectroscopic and Electronic Structure Study of ETHE1: Elucidating the Factors Influencing Sulfur Oxidation and Oxygenation in Mononuclear Nonheme Iron Enzymes

Overview
Journal J Am Chem Soc
Specialty Chemistry
Date 2018 Oct 27
PMID 30362717
Citations 11
Authors
Affiliations
Soon will be listed here.
Abstract

ETHE1 is a member of a growing subclass of nonheme Fe enzymes that catalyzes transformations of sulfur-containing substrates without a cofactor. ETHE1 dioxygenates glutathione persulfide (GSSH) to glutathione (GSH) and sulfite in a reaction which is similar to that of cysteine dioxygenase (CDO), but with monodentate (vs bidentate) substrate coordination and a 2-His/1-Asp (vs 3-His) ligand set. In this study, we demonstrate that GSS binds directly to the iron active site, causing coordination unsaturation to prime the site for O activation. Nitrosyl complexes without and with GSSH were generated and spectroscopically characterized as unreactive analogues for the invoked ferric superoxide intermediate. New spectral features from persulfide binding to the Fe include the appearance of a low-energy Fe ligand field transition, an energy shift of a NO to Fe CT transition, and two new GSS to Fe CT transitions. Time-dependent density functional theory calculations were used to simulate the experimental spectra to determine the persulfide orientation. Correlation of these spectral features with those of monodentate cysteine binding in isopenicillin N synthase (IPNS) shows that the persulfide is a poorer donor but still results in an equivalent frontier molecular orbital for reactivity. The ETHE1 persulfide dioxygenation reaction coordinate was calculated, and while the initial steps are similar to the reaction coordinate of CDO, an additional hydrolysis step is required in ETHE1 to break the S-S bond. Unlike ETHE1 and CDO, which both oxygenate sulfur, IPNS oxidizes sulfur through an initial H atom abstraction. Thus, factors that determine oxygenase vs oxidase reactivity were evaluated. In general, sulfur oxygenation is thermodynamically favored and has a lower barrier for reactivity. However, in IPNS, second-sphere residues in the active site pocket constrain the substrate, raising the barrier for sulfur oxygenation relative to oxidation via H atom abstraction.

Citing Articles

Mechanism of Intracellular Elemental Sulfur Oxidation in , Where Persulfide Dioxygenase Plays a Key Role.

Rudenko T, Trubitsina L, Terentyev V, Trubitsin I, Borshchevskiy V, Tishchenko S Int J Mol Sci. 2024; 25(20).

PMID: 39456744 PMC: 11507549. DOI: 10.3390/ijms252010962.


Spectroscopic definition of ferrous active sites in non-heme iron enzymes.

Solomon E, Gipson R Methods Enzymol. 2024; 703:29-49.

PMID: 39261000 PMC: 11391101. DOI: 10.1016/bs.mie.2024.05.019.


ETHE1 dampens colorectal cancer angiogenesis by promoting TC45 Dephosphorylation of STAT3 to inhibit VEGF-A expression.

She X, Xu J, Zhang H, Yu C, Rao Z, Zhang J Cell Death Dis. 2024; 15(8):631.

PMID: 39198402 PMC: 11358511. DOI: 10.1038/s41419-024-07021-w.


Phosphorylated FOXQ1, a novel substrate of JNK1, inhibits sorafenib-induced ferroptosis by activating ETHE1 in hepatocellular carcinoma.

Liu Y, Shao K, Yang W, Shen Q, Lu M, Shao Z Cell Death Dis. 2024; 15(6):395.

PMID: 38839744 PMC: 11153576. DOI: 10.1038/s41419-024-06789-1.


ETHE1 Accelerates Triple-Negative Breast Cancer Metastasis by Activating GCN2/eIF2α/ATF4 Signaling.

Yang S, Liao L, Hu S, Deng L, Andriani L, Zhang T Int J Mol Sci. 2023; 24(19).

PMID: 37834012 PMC: 10572406. DOI: 10.3390/ijms241914566.


References
1.
Orville A, Chen V, Kriauciunas A, Harpel M, Fox B, Munck E . Thiolate ligation of the active site Fe2+ of isopenicillin N synthase derives from substrate rather than endogenous cysteine: spectroscopic studies of site-specific Cys----Ser mutated enzymes. Biochemistry. 1992; 31(19):4602-12. DOI: 10.1021/bi00134a010. View

2.
Tiranti V, Viscomi C, Hildebrandt T, Di Meo I, Mineri R, Tiveron C . Loss of ETHE1, a mitochondrial dioxygenase, causes fatal sulfide toxicity in ethylmalonic encephalopathy. Nat Med. 2009; 15(2):200-5. DOI: 10.1038/nm.1907. View

3.
Friesner R, Banks J, Murphy R, Halgren T, Klicic J, Mainz D . Glide: a new approach for rapid, accurate docking and scoring. 1. Method and assessment of docking accuracy. J Med Chem. 2004; 47(7):1739-49. DOI: 10.1021/jm0306430. View

4.
Arciero D, Lipscomb J, Huynh B, Kent T, Munck E . EPR and Mössbauer studies of protocatechuate 4,5-dioxygenase. Characterization of a new Fe2+ environment. J Biol Chem. 1983; 258(24):14981-91. View

5.
Burzlaff N, Rutledge P, Clifton I, Hensgens C, Pickford M, Adlington R . The reaction cycle of isopenicillin N synthase observed by X-ray diffraction. Nature. 1999; 401(6754):721-4. DOI: 10.1038/44400. View