» Articles » PMID: 30320324

Identification of a Lysine 4-hydroxylase from the Glidobactin Biosynthesis and Evaluation of Its Biocatalytic Potential

Overview
Journal Org Biomol Chem
Specialties Biochemistry
Chemistry
Date 2018 Oct 16
PMID 30320324
Citations 19
Authors
Affiliations
Soon will be listed here.
Abstract

We present the functional characterization of GlbB, a lysine 4-hydroxylase from the glidobactin biosynthetic gene cluster. Despite its narrow substrate specificity, GlbB is able to catalyze the hydroxylation of l-lysine with excellent total turnover number and complete regio- and diastereoselectivity. The synthetic utility of GlbB is illustrated by its use in the efficient preparation of a key dipeptide fragment of glidobactin.

Citing Articles

Sequential oxidation of L-lysine by a non-heme iron hydroxylase.

Reynolds E, Smith T, Damodaran A, Bhagi-Damodaran A bioRxiv. 2025; .

PMID: 39975345 PMC: 11838370. DOI: 10.1101/2025.01.27.635104.


Oxidative modification of free-standing amino acids by Fe(II)/αKG-dependent oxygenases.

Tao H, Abe I Eng Microbiol. 2024; 3(1):100062.

PMID: 39628521 PMC: 11611013. DOI: 10.1016/j.engmic.2022.100062.


Machine Learning Guided Rational Design of a Non-Heme Iron-Based Lysine Dioxygenase Improves its Total Turnover Number.

Hunter Wilson R, Diaz D, Damodaran A, Bhagi-Damodaran A Chembiochem. 2024; 25(24):e202400495.

PMID: 39370399 PMC: 11664912. DOI: 10.1002/cbic.202400495.


Machine learning guided rational design of a non-heme iron-based lysine dioxygenase improves its total turnover number.

Hunter Wilson R, Damodaran A, Bhagi-Damodaran A bioRxiv. 2024; .

PMID: 38895203 PMC: 11185610. DOI: 10.1101/2024.06.04.597480.


An Active Site Tyr Residue Guides the Regioselectivity of Lysine Hydroxylation by Nonheme Iron Lysine-4-hydroxylase Enzymes through Proton-Coupled Electron Transfer.

Cao Y, Hay S, de Visser S J Am Chem Soc. 2024; 146(17):11726-11739.

PMID: 38636166 PMC: 11066847. DOI: 10.1021/jacs.3c14574.


References
1.
Schellenberg B, Bigler L, Dudler R . Identification of genes involved in the biosynthesis of the cytotoxic compound glidobactin from a soil bacterium. Environ Microbiol. 2007; 9(7):1640-50. DOI: 10.1111/j.1462-2920.2007.01278.x. View

2.
Groll M, Schellenberg B, Bachmann A, Archer C, Huber R, Powell T . A plant pathogen virulence factor inhibits the eukaryotic proteasome by a novel mechanism. Nature. 2008; 452(7188):755-8. DOI: 10.1038/nature06782. View

3.
Clerc J, Groll M, Illich D, Bachmann A, Huber R, Schellenberg B . Synthetic and structural studies on syringolin A and B reveal critical determinants of selectivity and potency of proteasome inhibition. Proc Natl Acad Sci U S A. 2009; 106(16):6507-12. PMC: 2672505. DOI: 10.1073/pnas.0901982106. View

4.
Kodera T, Smirnov S, Samsonova N, Kozlov Y, Koyama R, Hibi M . A novel l-isoleucine hydroxylating enzyme, l-isoleucine dioxygenase from Bacillus thuringiensis, produces (2S,3R,4S)-4-hydroxyisoleucine. Biochem Biophys Res Commun. 2009; 390(3):506-10. DOI: 10.1016/j.bbrc.2009.09.126. View

5.
Tsukamoto S, Yokosawa H . Inhibition of the ubiquitin-proteasome system by natural products for cancer therapy. Planta Med. 2010; 76(11):1064-74. DOI: 10.1055/s-0029-1240901. View