» Articles » PMID: 29795125

Towards a Complete Map of the Human Long Non-coding RNA Transcriptome

Overview
Journal Nat Rev Genet
Specialty Genetics
Date 2018 May 26
PMID 29795125
Citations 312
Authors
Affiliations
Soon will be listed here.
Abstract

Gene maps, or annotations, enable us to navigate the functional landscape of our genome. They are a resource upon which virtually all studies depend, from single-gene to genome-wide scales and from basic molecular biology to medical genetics. Yet present-day annotations suffer from trade-offs between quality and size, with serious but often unappreciated consequences for downstream studies. This is particularly true for long non-coding RNAs (lncRNAs), which are poorly characterized compared to protein-coding genes. Long-read sequencing technologies promise to improve current annotations, paving the way towards a complete annotation of lncRNAs expressed throughout a human lifetime.

Citing Articles

Deciphering the epigenetic role of long non-coding RNAs in mood disorders: Focus on human brain studies.

Roy B, Verma A, Funahashi Y, Dwivedi Y Clin Transl Med. 2025; 15(3):e70135.

PMID: 40038891 PMC: 11879898. DOI: 10.1002/ctm2.70135.


[LINC00837/miR-671-5p/SERPINE2 functional axis promotes pathological processes of fibroblast-like synovial cells in rheumatoid arthritis].

Cao Z, Wang Y, Wang M, Sun Y, Liu F Nan Fang Yi Ke Da Xue Xue Bao. 2025; 45(2):371-378.

PMID: 40031981 PMC: 11875867. DOI: 10.12122/j.issn.1673-4254.2025.02.18.


Long Non-Coding RNAs: Crucial Regulators in Alzheimer's Disease Pathogenesis and Prospects for Precision Medicine.

Yang C, Li Y, Chen C, Sun Z, Liu E, Wei N Mol Neurobiol. 2025; .

PMID: 39907902 DOI: 10.1007/s12035-025-04729-4.


Clinical Significance and Pathogenic Mechanisms of Long Non-Coding RNA TRPM2-AS in Cancers.

Huang S, Li B, Chen H, Rong C, Yang Z, Zhang X Technol Cancer Res Treat. 2025; 24:15330338251315625.

PMID: 39865876 PMC: 11770775. DOI: 10.1177/15330338251315625.


Cellular Senescence-Related Long Non-coding RNA Signatures Predict Prognosis in Juvenile Osteosarcoma.

Zhao P, Chang J, Chen Y, Sun X, Ma X, Zhou C Phenomics. 2024; 4(5):430-452.

PMID: 39723224 PMC: 11666862. DOI: 10.1007/s43657-023-00132-y.


References
1.
Huang J, Chen M, Chen D, Gao X, Zhu S, Huang H . A Peptide Encoded by a Putative lncRNA HOXB-AS3 Suppresses Colon Cancer Growth. Mol Cell. 2017; 68(1):171-184.e6. DOI: 10.1016/j.molcel.2017.09.015. View

2.
Adams D, Altucci L, Antonarakis S, Ballesteros J, Beck S, Bird A . BLUEPRINT to decode the epigenetic signature written in blood. Nat Biotechnol. 2012; 30(3):224-6. DOI: 10.1038/nbt.2153. View

3.
Kapusta A, Kronenberg Z, Lynch V, Zhuo X, Ramsay L, Bourque G . Transposable elements are major contributors to the origin, diversification, and regulation of vertebrate long noncoding RNAs. PLoS Genet. 2013; 9(4):e1003470. PMC: 3636048. DOI: 10.1371/journal.pgen.1003470. View

4.
Zhang B, Gunawardane L, Niazi F, Jahanbani F, Chen X, Valadkhan S . A novel RNA motif mediates the strict nuclear localization of a long noncoding RNA. Mol Cell Biol. 2014; 34(12):2318-29. PMC: 4054287. DOI: 10.1128/MCB.01673-13. View

5.
Gonzalez-Porta M, Calvo M, Sammeth M, Guigo R . Estimation of alternative splicing variability in human populations. Genome Res. 2011; 22(3):528-38. PMC: 3290788. DOI: 10.1101/gr.121947.111. View