Gen. Nov., Sp. Nov., a New Bacterium Isolated from Human Stool

Overview

Journal New Microbes New Infect

Publisher Elsevier

Specialty Infectious Diseases

Date 2017 Dec 6

PMID 29204287

Citations 7

Authors

M Bilen

F Cadoret

M Richez

E Tomei

Z Daoud

D Raoult

P-E Fournier

Affiliations

Soon will be listed here.

Abstract

Strain Marseille-P3237 was isolated from a stool sample of a healthy 35-year-old Congolese pygmy female. This anaerobic, Gram-negative, non-spore-forming and non-motile coccus-shaped bacterium is a member of the order . It exhibits a 2 009 306-bp genome with a 65.46 mol% G+C content and is closely related to, but distinct from, members of the genus. We propose the creation of the new genus gen. nov. and of the new species sp. nov.

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References

Bilen M, Cadoret F, Fournier P, Daoud Z, Raoult D . gen. nov., sp. nov., a new bacterium isolated from a stool sample from a pygmy woman. New Microbes New Infect. 2016; 15:40-41. PMC: 5137330. DOI: 10.1016/j.nmni.2016.10.006. View

Fournier P, Drancourt M . New Microbes New Infections promotes modern prokaryotic taxonomy: a new section "TaxonoGenomics: new genomes of microorganisms in humans". New Microbes New Infect. 2015; 7:48-9. PMC: 4506979. DOI: 10.1016/j.nmni.2015.06.001. View

Li X, Jensen R, Hojberg O, Canibe N, Borg Jensen B . Olsenella scatoligenes sp. nov., a 3-methylindole- (skatole) and 4-methylphenol- (p-cresol) producing bacterium isolated from pig faeces. Int J Syst Evol Microbiol. 2015; 65(Pt 4):1227-1233. DOI: 10.1099/ijs.0.000083. View

Yilmaz P, Parfrey L, Yarza P, Gerken J, Pruesse E, Quast C . The SILVA and "All-species Living Tree Project (LTP)" taxonomic frameworks. Nucleic Acids Res. 2013; 42(Database issue):D643-8. PMC: 3965112. DOI: 10.1093/nar/gkt1209. View

Lagier J, Armougom F, Million M, Hugon P, Pagnier I, Robert C . Microbial culturomics: paradigm shift in the human gut microbiome study. Clin Microbiol Infect. 2012; 18(12):1185-93. DOI: 10.1111/1469-0691.12023. View

Morel A, Dubourg G, Prudent E, Edouard S, Gouriet F, Casalta J . Complementarity between targeted real-time specific PCR and conventional broad-range 16S rDNA PCR in the syndrome-driven diagnosis of infectious diseases. Eur J Clin Microbiol Infect Dis. 2014; 34(3):561-70. DOI: 10.1007/s10096-014-2263-z. View

Raoult D, Henrissat B . Are stool samples suitable for studying the link between gut microbiota and obesity?. Eur J Epidemiol. 2014; 29(5):307-9. DOI: 10.1007/s10654-014-9905-4. View

Shreiner A, Kao J, Young V . The gut microbiome in health and in disease. Curr Opin Gastroenterol. 2014; 31(1):69-75. PMC: 4290017. DOI: 10.1097/MOG.0000000000000139. View

Turnbaugh P, Ley R, Hamady M, Fraser-Liggett C, Knight R, Gordon J . The human microbiome project. Nature. 2007; 449(7164):804-10. PMC: 3709439. DOI: 10.1038/nature06244. View

10.

Dewhirst F, Paster B, Tzellas N, Coleman B, DOWNES J, Spratt D . Characterization of novel human oral isolates and cloned 16S rDNA sequences that fall in the family Coriobacteriaceae: description of olsenella gen. nov., reclassification of Lactobacillus uli as Olsenella uli comb. nov. and description of Olsenella.... Int J Syst Evol Microbiol. 2001; 51(Pt 5):1797-1804. DOI: 10.1099/00207713-51-5-1797. View

11.

Elsawi Z, Hamidou Togo A, Beye M, Dubourg G, Andrieu C, Armsrtong N . Hugonella massiliensis gen. nov., sp. nov., genome sequence, and description of a new strictly anaerobic bacterium isolated from the human gut. Microbiologyopen. 2017; 6(4). PMC: 5552949. DOI: 10.1002/mbo3.458. View

12.

Kim M, Oh H, Park S, Chun J . Towards a taxonomic coherence between average nucleotide identity and 16S rRNA gene sequence similarity for species demarcation of prokaryotes. Int J Syst Evol Microbiol. 2014; 64(Pt 2):346-351. DOI: 10.1099/ijs.0.059774-0. View

13.

Lagier J, Elkarkouri K, Rivet R, Couderc C, Raoult D, Fournier P . Non contiguous-finished genome sequence and description of Senegalemassilia anaerobia gen. nov., sp. nov. Stand Genomic Sci. 2013; 7(3):343-56. PMC: 3764928. DOI: 10.4056/sigs.3246665. View

14.

Edgar R . MUSCLE: multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Res. 2004; 32(5):1792-7. PMC: 390337. DOI: 10.1093/nar/gkh340. View

15.

Price M, Dehal P, Arkin A . FastTree: computing large minimum evolution trees with profiles instead of a distance matrix. Mol Biol Evol. 2009; 26(7):1641-50. PMC: 2693737. DOI: 10.1093/molbev/msp077. View