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Build Your Own Soil: Exploring Microfluidics to Create Microbial Habitat Structures

Overview
Journal ISME J
Date 2017 Nov 15
PMID 29135971
Citations 53
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Abstract

Soil is likely the most complex ecosystem on earth. Despite the global importance and extraordinary diversity of soils, they have been notoriously challenging to study. We show how pioneering microfluidic techniques provide new ways of studying soil microbial ecology by allowing simulation and manipulation of chemical conditions and physical structures at the microscale in soil model habitats.

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References
1.
Hays S, Patrick W, Ziesack M, Oxman N, Silver P . Better together: engineering and application of microbial symbioses. Curr Opin Biotechnol. 2015; 36:40-9. DOI: 10.1016/j.copbio.2015.08.008. View

2.
Pion M, Spangenberg J, Simon A, Bindschedler S, Flury C, Chatelain A . Bacterial farming by the fungus Morchella crassipes. Proc Biol Sci. 2013; 280(1773):20132242. PMC: 3826226. DOI: 10.1098/rspb.2013.2242. View

3.
Eisenhauer N, Antunes P, Bennett A, Birkhofer K, Bissett A, Bowker M . Priorities for research in soil ecology. Pedobiologia (Jena). 2017; 63:1-7. PMC: 5675051. DOI: 10.1016/j.pedobi.2017.05.003. View

4.
Volpatti L, Yetisen A . Commercialization of microfluidic devices. Trends Biotechnol. 2014; 32(7):347-50. DOI: 10.1016/j.tibtech.2014.04.010. View

5.
Mannik J, Driessen R, Galajda P, Keymer J, Dekker C . Bacterial growth and motility in sub-micron constrictions. Proc Natl Acad Sci U S A. 2009; 106(35):14861-6. PMC: 2729279. DOI: 10.1073/pnas.0907542106. View