Thomas S Shimizu
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Explore the profile of Thomas S Shimizu including associated specialties, affiliations and a list of published articles.
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29
Citations
1047
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Recent Articles
1.
Oyarte Galvez L, Bisot C, Bourrianne P, Cargill R, Klein M, van Son M, et al.
Nature
. 2025 Feb;
639(8053):172-180.
PMID: 40011773
For nearly 450 million years, mycorrhizal fungi have constructed networks to collect and trade nutrient resources with plant roots. Owing to their dependence on host-derived carbon, these fungi face conflicting...
2.
Vo L, Avgidis F, Mattingly H, Edmonds K, Burger I, Balasubramanian R, et al.
Proc Natl Acad Sci U S A
. 2025 Feb;
122(8):e2423774122.
PMID: 39970001
Cell populations must adjust their phenotypic composition to adapt to changing environments. One adaptation strategy is to maintain distinct phenotypic subsets within the population and to modulate their relative abundances...
3.
Klein M, Bisot C, Oyarte Galvez L, Kokkoris V, Shimizu T, Dong L, et al.
Front Microbiol
. 2024 Nov;
15:1470469.
PMID: 39483758
Strigolactones are phytohormones that influence arbuscular mycorrhizal fungal (AMF) spore germination, pre-symbiotic hyphal branching, and metabolic rates. Historically, strigolactone effects have been tested on single AMF strains. An open question...
4.
Moore J, Kamino K, Kottou R, Shimizu T, Emonet T
Cell Syst
. 2024 Jul;
15(7):628-638.e8.
PMID: 38981486
In uncertain environments, phenotypic diversity can be advantageous for survival. However, as the environmental uncertainty decreases, the relative advantage of having diverse phenotypes decreases. Here, we show how populations of...
5.
Vo L, Avgidis F, Mattingly H, Edmonds K, Burger I, Balasubramanian R, et al.
bioRxiv
. 2024 Jan;
PMID: 38260286
Significance Statement: Conventional cell adaptation mechanisms, like gene regulation and stochastic phenotypic switching, act swiftly but are limited to a few traits, while mutation-driven adaptations unfold slowly. By quantifying phenotypic...
6.
Shimizu T, Kiers E, Stone H
Elife
. 2023 May;
12.
PMID: 37227267
A combination of imaging and theory suggests a new mechanism for the remodeling of veins in vascular networks.
7.
Kamino K, Kadakia N, Avgidis F, Liu Z, Aoki K, Shimizu T, et al.
Proc Natl Acad Sci U S A
. 2023 Apr;
120(15):e2211807120.
PMID: 37014867
Intensity-based time-lapse fluorescence resonance energy transfer (FRET) microscopy has been a major tool for investigating cellular processes, converting otherwise unobservable molecular interactions into fluorescence time series. However, inferring the molecular...
8.
Moore J, Kamino K, Kottou R, Shimizu T, Emonet T
bioRxiv
. 2023 Feb;
PMID: 36798398
In uncertain environments, phenotypic diversity can be advantageous for survival. However, as the environmental uncertainty decreases, the relative advantage of having diverse phenotypes decreases. Here, we show how populations of...
9.
HI-NESS: a family of genetically encoded DNA labels based on a bacterial nucleoid-associated protein
Rashid F, Mahlandt E, van der Vaart M, Boer D, Varela Alvarez M, Henneman B, et al.
Nucleic Acids Res
. 2021 Nov;
50(2):e10.
PMID: 34734265
The interplay between three-dimensional chromosome organisation and genomic processes such as replication and transcription necessitates in vivo studies of chromosome dynamics. Fluorescent organic dyes are often used for chromosome labelling...
10.
Gude S, Pince E, Taute K, Seinen A, Shimizu T, Tans S
Nature
. 2020 Feb;
578(7796):588-592.
PMID: 32076271
Elucidating elementary mechanisms that underlie bacterial diversity is central to ecology and microbiome research. Bacteria are known to coexist by metabolic specialization, cooperation and cyclic warfare. Many species are also...